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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Mok, Y.K."

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Aedes aegypti (4)
	Homo sapiens (4)
	Aeromonas hydrophila (3)
	Blattella germanica (3)
	Blomia tropicalis (2)
	Dermatophagoides farinae (2)
	Escherichia coli (2)
	Edwardsiella piscicida EIB202 (1)
	Edwardsiella tarda (1)
	Escherichia coli O157:H7 (1)

More...

Taxonomy

	Eukaryota (16)
	Bacteria (9)

Experimental Method

	X-RAY DIFFRACTION (18)
	SOLUTION NMR (7)

Polymer Entity Type

Protein (25)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (5)
	2.5 - 3.0 (8)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (8)
	2010 - 2014 (6)
	2015 - 2019 (4)
	2020 - 2024 (6)

Enzyme Classification Name

	Hydrolases (4)
	Oxidoreductases (1)

Membrane Protein Annotation

OPM (3)

Symmetry Type

	Asymmetric (19)
	Cyclic (9)

SCOP Classification

	All beta proteins (2)
	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 25 Structures

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1Q5F \| pdb_00001q5f	Download File View File

NMR Structure of Type IVb pilin (PilS) from Salmonella typhi

Xu, X.F., Tan, Y.W., Hackett, J., Zhang, M., Mok, Y.K.

(2004) J Biological Chem 279: 31599-31605

Released	2004-07-27
Method	SOLUTION NMR
Organisms	Salmonella enterica subsp. enterica serovar Typhi
Macromolecule	PilS (protein)

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2A0A \| pdb_00002a0a	Download File View File

Solution Structure of Der f 13, Group 13 Allergen from House Dust Mites

Chan, S.L., Mok, Y.K.

(2006) J Immunol 176: 4852-4860

Released	2006-04-11
Method	SOLUTION NMR
Organisms	Dermatophagoides farinae
Macromolecule	Der f 13 (protein)

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2JRK \| pdb_00002jrk	Download File View File

NMR Structure and Epitope Mapping of Blo t 5

Chan, S., Mok, Y.

(2008) J Immunol 181: 2586-2596

Released	2008-07-01
Method	SOLUTION NMR
Organisms	Blomia tropicalis
Macromolecule	Mite allergen Blo t 5 (protein)

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2LM9 \| pdb_00002lm9	Download File View File

The NMR structure of a major allergen from dust mite

Tan, K.W., Mok, Y.K.

(2012) J Biological Chem

Released	2012-08-22
Method	SOLUTION NMR
Organisms	Blomia tropicalis
Macromolecule	Blo t 21 allergen (protein)

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2NDK \| pdb_00002ndk	Download File View File

20 lowest energy ensemble of dermcidin (DCD1L) NMR structure

Tan, K.W., Mok, Y.K.

(2017) Sci Rep 7: 13923-13923

Released	2017-07-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Dermcidin (protein)

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2OVS \| pdb_00002ovs	Download File View File

Crystal structure of a Type Three secretion System protein

Jobichen, C., Li, M., Sivaraman, J.

(2007) PLoS Pathog 3: e69-e69

Released	2007-05-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	L0044 (protein)
Unique Ligands	PG4

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2Q1K \| pdb_00002q1k	Download File View File

Cyrstal Structure of AscE from Aeromonas hydrophilla

Tan, Y.W., Yu, H.B., Leung, K.Y., Sivaraman, J., Mok, Y.K.

(2008) Protein Sci 17: 1748-1760

Released	2008-06-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Aeromonas hydrophila
Macromolecule	AscE (protein)

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3E3C \| pdb_00003e3c	Download File View File

Structure of GrlR-lipid complex

Jobichen, C., Sivaraman, J.

(2009) Biochem J

Released	2009-04-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	L0044 (protein)
Unique Ligands	HHG

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3EAA \| pdb_00003eaa	Download File View File

Structure of a type six secretion system protein

Jobichen, C., Sivaraman, J.

(2010) PLoS One 5: e12910-e12910

Released	2009-08-25
Method	X-RAY DIFFRACTION 2.794 Å
Organisms	Edwardsiella tarda
Macromolecule	EvpC (protein)

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3EBK \| pdb_00003ebk	Download File View File

Crystal structure of major allergens, Bla g 4 from cockroaches

Tan, Y.W., Chan, S.L., Chew, F.T., Sivaraman, J., Mok, Y.K.

(2008) J Biological Chem 284: 3148-3157

Released	2008-12-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Blattella germanica
Macromolecule	Allergen Bla g 4 (protein)

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3EBW \| pdb_00003ebw	Download File View File

Crystal structure of major allergens, Per a 4 from cockroaches

Tan, Y.W., Chan, S.L., Chew, F.T., Sivaraman, J., Mok, Y.K.

(2008) J Biological Chem 284: 3148-3157

Released	2008-12-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Periplaneta americana
Macromolecule	Per a 4 allergen (protein)
Unique Ligands	PE4

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3PH0 \| pdb_00003ph0	Download File View File

Crystal structure of the heteromolecular chaperone, AscE-AscG, from the type III secretion system in Aeromonas hydrophila

Chatterjee, C., Kumar, S., Chakraborty, S., Tan, Y.W., Leung, K.Y., Sivaraman, J., Mok, Y.K.

(2011) PLoS One 6: e19208-e19208

Released	2011-07-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Aeromonas hydrophila
Macromolecule	AscE (protein) AscG (protein)

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3UV1 \| pdb_00003uv1	Download File View File

Crystal structure a major allergen from dust mite

Tan, K.W., Kumar, T., Chew, F.T., Mok, Y.K.

(2012) PLoS One 7: e44850-e44850

Released	2012-10-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Dermatophagoides farinae
Macromolecule	Der f 7 allergen (protein)

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3WXX \| pdb_00003wxx	Download File View File

Crystal Structure of a T3SS complex from Aeromonas hydrophila

Nguyen, V.S., Jobichen, C., Sivaraman, J., Henry, Y.K.M.

(2015) Structure 23: 2022-2031

Released	2015-10-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Aeromonas hydrophila
Macromolecule	AcrH (protein) AopB (protein)
Unique Ligands	MG

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4KT5 \| pdb_00004kt5	Download File View File

Structure of GrlR-GrlA complex

Padavannil, A., Jobichen, C., Sivaraman, J.

(2013) Nat Commun 4: 2546-2546

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli O157:H7
Macromolecule	GrlA (protein) GrlR (protein)
Unique Ligands	PG4

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4N7C \| pdb_00004n7c	Download File View File

Structural re-examination of native Bla g 4

Offermann, L.R., Chan, S.L., Osinski, T., Tan, Y.W., Chew, F.T., Sivaraman, J., Mok, Y.K., Minor, W., Chruszcz, M.

(2014) Mol Immunol 60: 86-94

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Blattella germanica
Macromolecule	Bla g 4 allergen variant 1 (protein)
Unique Ligands	AEF, CIT, GOL

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4N7D \| pdb_00004n7d	Download File View File

Selenomethionine incorporated Bla g 4

Offermann, L.R., Chan, S.L., Osinski, T., Tan, Y.W., Chew, F.T., Sivaraman, J., Mok, Y.K., Minor, W., Chruszcz, M.

(2014) Mol Immunol 60: 86-94

Released	2014-05-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Blattella germanica
Macromolecule	Bla g 4 allergen variant 1 (protein)
Unique Ligands	CIT, GOL

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5YHN \| pdb_00005yhn	Download File View File

Solution structure of the LEKTI Domain 4

Mok, Y.K., Ramesh, K.

(2018) Structure 26: 1178-1186.e3

Released	2018-08-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	cDNA FLJ60407, highly similar to Serine protease inhibitor Kazal-type 5 (protein)

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5ZPV \| pdb_00005zpv	Download File View File

Solution Structure of Thioredoxin-Like Effector Protein (TRX3) from Edwardsiella piscicida

Sayed, A.M., Mok, Y.K.

(2020) Int J Biol Macromol 148: 89-101

Released	2019-05-22
Method	SOLUTION NMR
Organisms	Edwardsiella piscicida EIB202
Macromolecule	Thioredoxin (H-type,TRX-H) (protein)

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6KOR \| pdb_00006kor	Download File View File

Crystal structure of the RRM domain of SYNCRIP

Chen, Y., Chan, J., Chen, W., Jobichen, C.

(2020) RNA 26: 290-305

Released	2020-01-22
Method	X-RAY DIFFRACTION 2.602 Å
Organisms	Homo sapiens
Macromolecule	Heterogeneous nuclear ribonucleoprotein Q (protein)

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7E4U \| pdb_00007e4u	Download File View File

Crystal structure of Peroxiredoxin-1

Ahmed, S., Mok, Y.K., Jobichen, C.

To be published

Released	2022-02-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Sparus aurata
Macromolecule	Peroxiredoxin 1 (protein)
Unique Ligands	CA, GOL

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7E4V \| pdb_00007e4v	Download File View File

Crystal structure of mosquito Staufen dsRNA binding domain 4

Gayathiri, S.K., Jobichen, C., Mok, Y.K.

To be published

Released	2022-02-16
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Aedes aegypti
Macromolecule	Staufen (protein)
Unique Ligands	GOL

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7E50 \| pdb_00007e50	Download File View File

Crystal structure of human microplasmin in complex with kazal-type inhibitor AaTI

Varsha, A.W., Jobichen, C., Mok, Y.K.

(2022) Protein Sci 31: 470-484

Released	2022-02-16
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Aedes aegypti Homo sapiens
Macromolecule	AAEL006007-PA (protein) Plasminogen (protein)
Unique Ligands	GOL, NA

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7EQX \| pdb_00007eqx	Download File View File

Crystal structure of an Aedes aegypti procarboxypeptidase B1

Choong, Y.K., Gavor, E., Jobichen, C., Sivaraman, J.

(2022) Life Sci Alliance 5:

Released	2021-11-10
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Aedes aegypti
Macromolecule	Carboxypeptidase B (protein)
Unique Ligands	ZN

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7EQZ \| pdb_00007eqz	Download File View File

Crystal structure of Carboxypeptidase B complexed with Potato Carboxypeptidase Inhibitor

Choong, Y.K., Gavor, E., Jobichen, C., Sivaraman, J.

(2021) Protein Sci 30: 2445-2456

Released	2021-11-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aedes aegypti Solanum tuberosum
Macromolecule	Carboxypeptidase B (protein) Metallocarboxypeptidase inhibitor (protein)
Unique Ligands	GLY, ZN

1 to 25 of 25 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1Q5F | pdb_00001q5f

2A0A | pdb_00002a0a

2JRK | pdb_00002jrk

2LM9 | pdb_00002lm9

2NDK | pdb_00002ndk

2OVS | pdb_00002ovs

2Q1K | pdb_00002q1k

3E3C | pdb_00003e3c

3EAA | pdb_00003eaa

3EBK | pdb_00003ebk

3EBW | pdb_00003ebw

3PH0 | pdb_00003ph0

3UV1 | pdb_00003uv1

3WXX | pdb_00003wxx

4KT5 | pdb_00004kt5

4N7C | pdb_00004n7c

4N7D | pdb_00004n7d

5YHN | pdb_00005yhn

5ZPV | pdb_00005zpv

6KOR | pdb_00006kor

7E4U | pdb_00007e4u

7E4V | pdb_00007e4v

7E50 | pdb_00007e50

7EQX | pdb_00007eqx

7EQZ | pdb_00007eqz