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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Enterococcus hirae ATCC 9790"

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

Enterococcus hirae ATCC 9790 (16)

Taxonomy

Bacteria (16)

Experimental Method

	X-RAY DIFFRACTION (15)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (2)
	2.5 - 3.0 (4)
	3.0 - 3.5 (6)
	4.0 - 4.5 (1)

Release Date

	2015 - 2019 (6)
	2020 - 2024 (10)

Enzyme Classification Name

	Translocases (12)
	Hydrolases (5)
	Oxidoreductases (2)

Membrane Protein Annotation

PDBTM (1)

Symmetry Type

	Cyclic (10)
	Asymmetric (6)

SCOP Classification

	Alpha and beta proteins (a/b) (5)
	All alpha proteins (3)
	All beta proteins (3)
	Coiled coil proteins (2)
	Artifacts (1)

AllSelected

1 to 16 of 16 Structures

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5IYS	Download File View File

Crystal structure of a dehydrosqualene synthase in complex with ligand

Liu, G.Z., Liu, W.D., Chen, C.C., Guo, R.T.

To be published

Released	2017-03-29
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	Phytoene synthase (protein)
Unique Ligands	FPS, MG, SO4

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5KNB	Download File View File

Crystal structure of the 2 ADP-bound V1 complex

Suzuki, K., Mizutani, K., Maruyama, S., Shimono, K., Imai, F.L., Muneyuki, E., Kakinuma, Y., Ishizuka-Katsura, Y., Shirouzu, M., Yokoyama, S., Yamato, I., Murata, T.

(2016) Nat Commun 7: 13235-13235

Released	2016-11-02
Method	X-RAY DIFFRACTION 3.251 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	V-type sodium ATPase catalytic subunit A (protein) V-type sodium ATPase subunit B (protein) V-type sodium ATPase subunit D (protein) V-type sodium ATPase subunit NtpG (F) (protein)
Unique Ligands	ADP, GOL, MG

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5KNC	Download File View File

Crystal structure of the 3 ADP-bound V1 complex

Suzuki, K., Mizutani, K., Maruyama, S., Shimono, K., Imai, F.L., Muneyuki, E., Kakinuma, Y., Ishizuka-Katsura, Y., Shirouzu, M., Yokoyama, S., Yamato, I., Murata, T.

(2016) Nat Commun 7: 13235-13235

Released	2016-11-02
Method	X-RAY DIFFRACTION 3.015 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	V-type sodium ATPase catalytic subunit A (protein) V-type sodium ATPase subunit B (protein) V-type sodium ATPase subunit D (protein) V-type sodium ATPase subunit NtpG (F) (protein)
Unique Ligands	ADP, GOL, MG, SO4

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5KND	Download File View File

Crystal structure of the Pi-bound V1 complex

Suzuki, K., Mizutani, K., Maruyama, S., Shimono, K., Imai, F.L., Muneyuki, E., Kakinuma, Y., Ishizuka-Katsura, Y., Shirouzu, M., Yokoyama, S., Yamato, I., Murata, T.

(2016) Nat Commun 7: 13235-13235

Released	2016-11-02
Method	X-RAY DIFFRACTION 2.888 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	V-type sodium ATPase catalytic subunit A (protein) V-type sodium ATPase subunit B (protein) V-type sodium ATPase subunit D (protein) V-type sodium ATPase subunit NtpG (F) (protein)
Unique Ligands	B3P, GOL, MG, PO4

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5ZE9	Download File View File

Crystal structure of AMP-PNP bound mutant A3B3 complex from Enterococcus hirae V-ATPase

Maruyama, S., Suzuki, K., Sasaki, H., Mizutani, K., Saito, Y., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Ichiro, Y., Murata, T.

(2019) Sci Adv 5: eaau8149-eaau8149

Released	2019-02-06
Method	X-RAY DIFFRACTION 2.102 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	V-type sodium ATPase catalytic subunit A (protein) V-type sodium ATPase subunit B (protein)
Unique Ligands	ANP, GOL, MES, MG

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5ZEA	Download File View File

Crystal structure of the nucleotide-free mutant A3B3

Maruyama, S., Suzuki, K., Mizutani, K., Saito, Y., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Ichiro, Y., Murata, T.

(2019) Sci Adv 5: eaau8149-eaau8149

Released	2019-02-06
Method	X-RAY DIFFRACTION 3.384 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	V-type sodium ATPase catalytic subunit A (protein) V-type sodium ATPase subunit B (protein)
Unique Ligands	GOL

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6M73	Download File View File

Crystal structure of Enterococcus hirae L-lactate oxidase in complex with D-lactate form ligand

Yoshida, H., Hiraka, K., Tsugawa, W., Sode, K.

(2022) Protein Sci 31:

Released	2021-03-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	L-lactate oxidase (protein)
Unique Ligands	EDO, FNR, LAC, PGE, PYR, TRS

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6M74	Download File View File

Crystal structure of Enterococcus hirae L-lactate oxidase M207L in complex with D-lactate form ligand

Yoshida, H., Hiraka, K., Tsugawa, W., Sode, K.

(2022) Protein Sci 31:

Released	2021-03-17
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	L-lactate oxidase (protein)
Unique Ligands	EDO, FNR, LAC, PGE, PYR, TRS

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7COQ	Download File View File

Hexameric Ring Complex of Engineered V1-ATPase bound to AMP-PNP: A3(De)3_(ANP)1cat

Kosugi, T., Tanabe, M., Koga, N.

To be published

Released	2021-08-11
Method	X-RAY DIFFRACTION 3.44 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	V-type sodium ATPase catalytic subunit A (protein) V-type sodium ATPase subunit B (protein)
Unique Ligands	ANP, MG

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7DQC	Download File View File

Crystal structure of nucleotide-free mutant A(S23C)3B(N64C)3 complex from Enterococcus hirae V-ATPase

Maruyama, S., Suzuki, K., Mizutani, K., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Murata, M.

To be published

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.706 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	V-type sodium ATPase catalytic subunit A (protein) V-type sodium ATPase subunit B (protein)
Unique Ligands	GOL

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7DQD	Download File View File

Crystal structure of the AMP-PNP-bound mutant A(S23C)3B(N64C)3 complex from enterococcus hirae V-ATPase

Maruyama, S., Suzuki, K., Mizutani, K., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Murata, T.

To be published

Released	2021-12-29
Method	X-RAY DIFFRACTION 3.383 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	V-type sodium ATPase catalytic subunit A (protein) V-type sodium ATPase subunit B (protein)
Unique Ligands	ANP, GOL, MG

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7DQE	Download File View File

Crystal structure of the ADP-bound mutant A(S23C)3B(N64C)3 complex from enterococcus hirae V-ATPase

Maruyama, S., Nakamoto, K., Suzuki, K., Mizutani, K., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Murata, T.

To be published

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.694 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	V-type sodium ATPase catalytic subunit A (protein) V-type sodium ATPase subunit B (protein)
Unique Ligands	ADP, MG, SO4

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8IGU	Download File View File

Hexameric Ring Complex of Engineered V1-ATPase: A3(De)3_empty

Kosugi, T., Tanabe, M., Koga, N.

(2023) Nat Chem 15: 1591-1598

Released	2023-07-12
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	V-type sodium ATPase catalytic subunit A (protein) V-type sodium ATPase subunit B (protein)

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8IGV	Download File View File

Hexameric Ring Complex of Engineered V1-ATPase bound to 5 ADPs: A3(De)3_(ADP-Pi)1cat(ADP)2cat,2non-cat

Kosugi, T., Tanabe, M., Koga, N.

(2023) Nat Chem 15: 1591-1598

Released	2023-07-12
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	V-type sodium ATPase catalytic subunit A (protein) V-type sodium ATPase subunit B (protein)
Unique Ligands	ADP, MG, PO4

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8IGW	Download File View File

Hexameric Ring Complex of Engineered V1-ATPase bound to 4 ADPs: A3(De)3_(ADP)3cat,1non-cat, Hexameric Ring Complex of Engineered V1-ATPase bound to 5 ADPs: A3(De)3_(ADP)3cat,2non-cat

Kosugi, T., Tanabe, M., Koga, N.

(2023) Nat Chem 15: 1591-1598

Released	2023-07-12
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	V-type sodium ATPase catalytic subunit A (protein) V-type sodium ATPase subunit B (protein)
Unique Ligands	ADP, MG

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8WCI	Download File View File

Cryo-EM structure of the inhibitor-bound Vo complex from Enterococcus hirae

Suzuki, K., Mikuriya, S., Adachi, N., Kawasaki, M., Senda, T., Moriya, T., Murata, T.

To be published

Released	2024-10-09
Method	ELECTRON MICROSCOPY 2.2 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	V-type sodium ATPase subunit I (protein) V-type sodium ATPase subunit K (protein)
Unique Ligands	CDL, NA, W3K