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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Verlinde, C.L.M.J."

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Search Summary

This query matches 30 Structures.

Refinements

Structure Determination Methodology

experimental (30)

Scientific Name of Source Organism

	Toxoplasma gondii (8)
	Entamoeba histolytica (3)
	Leishmania major (3)
	Plasmodium vivax (3)
	Trypanosoma brucei brucei TREU927 (3)
	Gallus gallus (2)
	Trypanosoma brucei (2)
	Trypanosoma brucei brucei (2)
	Eimeria tenella (1)
	Lama glama (1)

More...

Taxonomy

	Eukaryota (29)
	Bacteria (1)

Experimental Method

X-RAY DIFFRACTION (30)

Polymer Entity Type

Protein (30)

Refinement Resolution (Å)

	1.5 - 2.0 (10)
	2.0 - 2.5 (10)
	2.5 - 3.0 (8)
	3.0 - 3.5 (2)

Release Date

	1990 - 1994 (2)
	2005 - 2009 (2)
	2010 - 2014 (18)
	2015 - 2019 (7)
	2020 - 2024 (1)

Enzyme Classification Name

	Transferases (10)
	Ligases (9)
	Lyases (3)
	Hydrolases (2)
	Isomerases (2)
	Oxidoreductases (2)

Symmetry Type

	Asymmetric (18)
	Cyclic (8)
	Dihedral (4)

SCOP Classification

	Alpha and beta proteins (a+b) (8)
	Alpha and beta proteins (a/b) (6)
	Artifacts (5)
	All alpha proteins (4)
	All beta proteins (1)

AllSelected

1 to 25 of 30 Structures

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3DWR \| pdb_00003dwr	Download File View File

Leishmania major coproporphyrinogen III oxidase with bound ligand

Le Trong, I., Merritt, E.A., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

To be published

Released	2008-09-09
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Leishmania major
Macromolecule	Coproporphyrinogen III oxidase (protein)
Unique Ligands	0PA, ACT

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3DWS \| pdb_00003dws	Download File View File

Leishmania major Coproporphyrinogen III Oxidase with bound ligand

Le Trong, I., Merritt, E.A., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

To be published

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Leishmania major
Macromolecule	Coproporphyrinogen III oxidase (protein)
Unique Ligands	ACT, FIC

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3I7B \| pdb_00003i7b	Download File View File

Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with bumped kinase inhibitor NM-PP1

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

(2010) Nat Struct Mol Biol 17: 602-607

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.988 Å
Organisms	Toxoplasma gondii
Macromolecule	Calmodulin-domain protein kinase 1 (protein)
Unique Ligands	BK1, DMS, EDO

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3LSQ \| pdb_00003lsq	Download File View File

Trypanosoma brucei seryl-tRNA synthetase

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Trypanosoma brucei
Macromolecule	Seryl-tRNA synthetase (protein)
Unique Ligands	MLI, NA

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3LSS \| pdb_00003lss	Download File View File

Trypanosoma brucei seryl-tRNA synthetase in complex with ATP

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2010-03-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Trypanosoma brucei
Macromolecule	Seryl-tRNA synthetase (protein)
Unique Ligands	ATP, MLI, NA

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3LX3 \| pdb_00003lx3	Download File View File

Plasmodium vivax 6-pyruvoyltetrahydropterin synthase (PTPS) in complex with xanthopterin

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2010-03-09
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Plasmodium vivax
Macromolecule	6-pyruvoyl tetrahydrobiopterin synthase (protein)
Unique Ligands	XTN, ZN

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3LZE \| pdb_00003lze	Download File View File

Plasmodium vivax 6-pyruvoyltetrahydropterin synthase (PTPS), E37C catalytic residue mutant

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2010-04-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Plasmodium vivax
Macromolecule	Putative 6-pyruvoyl tetrahydrobiopterin synthase (protein)
Unique Ligands	PE0, ZN

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3M0N \| pdb_00003m0n	Download File View File

Plasmodium vivax 6-pyruvoyltetrahydropterin synthase (PTPS), E37A catalytic residue mutant

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2010-04-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Plasmodium vivax
Macromolecule	Putative 6-pyruvoyl tetrahydrobiopterin synthase (protein)
Unique Ligands	PE0, ZN

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3M4P \| pdb_00003m4p	Download File View File

Entamoeba histolytica asparaginyl-tRNA synthetase (AsnRS) in complex with asparaginyl-adenylate

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2010-03-23
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Entamoeba histolytica
Macromolecule	Asparaginyl-tRNA synthetase, putative (protein)
Unique Ligands	4AD, GOL, SO4

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3M4Q \| pdb_00003m4q	Download File View File

Entamoeba histolytica asparaginyl-tRNA synthetase (AsnRS)

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2010-03-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Entamoeba histolytica
Macromolecule	Asparaginyl-tRNA synthetase, putative (protein)

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3NYV \| pdb_00003nyv	Download File View File

Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with non-specific inhibitor WHI-P180

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2010-07-28
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Toxoplasma gondii
Macromolecule	Calmodulin-domain protein kinase 1 (protein)
Unique Ligands	DTQ

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3S4O \| pdb_00003s4o	Download File View File

Protein Tyrosine Phosphatase (putative) from Leishmania major

Merritt, E.A., Arakaki, T., Medical Structural Genomics of Pathogenic Protozoa (MSGPP), Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

To be published

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Leishmania major
Macromolecule	Protein tyrosine phosphatase-like protein (protein)
Unique Ligands	EPE, THJ

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3SO4 \| pdb_00003so4	Download File View File

Methionine-adenosyltransferase from Entamoeba histolytica

Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2011-07-20
Method	X-RAY DIFFRACTION 3.18 Å
Organisms	Entamoeba histolytica
Macromolecule	Methionine-adenosyltransferase (protein)
Unique Ligands	ACT

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3UPX \| pdb_00003upx	Download File View File

Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with inhibitor UW1300

Merritt, E.A., Larson, E.T.

(2012) J Med Chem 55: 2803-2810

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Toxoplasma gondii
Macromolecule	Calmodulin-domain protein kinase 1 (protein)
Unique Ligands	B6A

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3UPZ \| pdb_00003upz	Download File View File

Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with bumpless BKI analog UW1243

Merritt, E.A., Larson, E.T.

(2012) J Med Chem 55: 2803-2810

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Toxoplasma gondii
Macromolecule	Calmodulin-domain protein kinase 1 (protein)
Unique Ligands	B5A

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3UQF \| pdb_00003uqf	Download File View File

c-SRC kinase domain in complex with BKI RM-1-89

Merritt, E.A., Larson, E.T.

(2012) J Med Chem 55: 2803-2810

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Gallus gallus
Macromolecule	Proto-oncogene tyrosine-protein kinase Src (protein)
Unique Ligands	BK5

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3UQG \| pdb_00003uqg	Download File View File

c-SRC kinase domain in complex with bumpless BKI analog UW1243

Merritt, E.A., Larson, E.T.

(2012) J Med Chem 55: 2803-2810

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Gallus gallus
Macromolecule	Proto-oncogene tyrosine-protein kinase Src (protein)
Unique Ligands	B5A

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3V51 \| pdb_00003v51	Download File View File

Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with inhibitor RM-1-176

Merritt, E.A., Larson, E.T.

(2012) J Med Chem 55: 2803-2810

Released	2012-03-14
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Toxoplasma gondii
Macromolecule	Calmodulin-domain protein kinase 1 (protein)
Unique Ligands	I76

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3V5P \| pdb_00003v5p	Download File View File

Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with inhibitor UW1288

Merritt, E.A., Larson, E.T.

(2012) J Med Chem 55: 2803-2810

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Toxoplasma gondii
Macromolecule	Calmodulin-domain protein kinase 1 (protein)
Unique Ligands	C88

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3V5T \| pdb_00003v5t	Download File View File

Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with inhibitor UW1299

Merritt, E.A., Larson, E.T.

(2012) J Med Chem 55: 2803-2810

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Toxoplasma gondii
Macromolecule	Calmodulin-domain protein kinase 1 (protein)
Unique Ligands	UW9

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4YJN \| pdb_00004yjn	Download File View File

Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with inhibitor UW1639

Merritt, E.A.

(2015) ACS Med Chem Lett 6: 1184-1189

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Toxoplasma gondii
Macromolecule	Calmodulin-domain protein kinase 1 (protein)
Unique Ligands	UW4

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4YSJ \| pdb_00004ysj	Download File View File

Calcium-Dependent Protein Kinase from Eimeria tenella in complex with ADP

Merritt, E.A.

To be published

Released	2016-04-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Eimeria tenella
Macromolecule	Calmodulin-like domain protein kinase (protein)
Unique Ligands	ADP, CA, MG

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5TIM \| pdb_00005tim	Download File View File

REFINED 1.83 ANGSTROMS STRUCTURE OF TRYPANOSOMAL TRIOSEPHOSPHATE ISOMERASE, CRYSTALLIZED IN THE PRESENCE OF 2.4 M-AMMONIUM SULPHATE. A COMPARISON WITH THE STRUCTURE OF THE TRYPANOSOMAL TRIOSEPHOSPHATE ISOMERASE-GLYCEROL-3-PHOSPHATE COMPLEX

Wierenga, R.K., Hol, W.G.J.

(1991) J Mol Biology 220: 995-1015

Released	1992-10-15
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	DTT, SO4

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5USF \| pdb_00005usf	Download File View File

Leishmania donovani tyrosyl-tRNA synthetase in complex with nanobody and inhibitor

Barros-Alvarez, X., Hol, W.G.J.

(2017) Biochimie 138: 124-136

Released	2017-05-17
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Lama glama Leishmania donovani BPK282A1
Macromolecule	Immunoglobulin heavy chain variable region (protein) Tyrosyl-tRNA synthetase, putative (protein)
Unique Ligands	YSA

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5V49 \| pdb_00005v49	Download File View File

Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor (Chem 1917)

Barros-Alvarez, X., Hol, W.G.J.

(2017) Bioorg Med Chem Lett 27: 2702-2707

Released	2017-07-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Trypanosoma brucei brucei TREU927
Macromolecule	Methionyl-tRNA synthetase, putative (protein)
Unique Ligands	8WA, GOL, MET

1 to 25 of 30 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3DWR | pdb_00003dwr

3DWS | pdb_00003dws

3I7B | pdb_00003i7b

3LSQ | pdb_00003lsq

3LSS | pdb_00003lss

3LX3 | pdb_00003lx3

3LZE | pdb_00003lze

3M0N | pdb_00003m0n

3M4P | pdb_00003m4p

3M4Q | pdb_00003m4q

3NYV | pdb_00003nyv

3S4O | pdb_00003s4o

3SO4 | pdb_00003so4

3UPX | pdb_00003upx

3UPZ | pdb_00003upz

3UQF | pdb_00003uqf

3UQG | pdb_00003uqg

3V51 | pdb_00003v51

3V5P | pdb_00003v5p

3V5T | pdb_00003v5t

4YJN | pdb_00004yjn

4YSJ | pdb_00004ysj

5TIM | pdb_00005tim

5USF | pdb_00005usf

5V49 | pdb_00005v49