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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Tanaka, H."

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Search Summary

This query matches 113 Structures.

Refinements

Structure Determination Methodology

experimental (113)

Scientific Name of Source Organism

	Homo sapiens (21)
	Chlamydomonas reinhardtii (10)
	Gluconobacter japonicus (8)
	Phanerodontia chrysosporium (7)
	Thermoanaerobacterium xylanolyticum LX-11 (6)
	Rattus norvegicus (5)
	Zea mays (5)
	synthetic construct (5)
	Arabidopsis thaliana (4)
	Gallus gallus (4)

More...

Taxonomy

	Eukaryota (67)
	Bacteria (39)
	other sequences (5)
	Archaea (3)
	Riboviria (3)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

	X-RAY DIFFRACTION (76)
	ELECTRON MICROSCOPY (31)
	NEUTRON DIFFRACTION (6)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (113)
	DNA (6)

Refinement Resolution (Å)

	0.5 - 1.0 (5)
	1.0 - 1.5 (13)
	1.5 - 2.0 (33)
	2.0 - 2.5 (20)
	2.5 - 3.0 (20)
	3.0 - 3.5 (9)
	3.5 - 4.0 (6)
	> 4.5 (7)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (8)
	2005 - 2009 (5)
	2010 - 2014 (16)
	2015 - 2019 (22)
	2020 - 2024 (46)
	2025 - 2029 (15)

Enzyme Classification Name

	Oxidoreductases (28)
	Hydrolases (21)
	Transferases (9)
	Lyases (8)
	Isomerases (1)
	Translocases (1)

Membrane Protein Annotation

	PDBTM (5)
	OPM (4)
	MemProtMD (3)
	mpstruc (3)

Symmetry Type

	Asymmetric (81)
	Cyclic (24)
	Dihedral (8)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (23)
	Alpha and beta proteins (a+b) (7)
	Small proteins (4)
	All alpha proteins (3)
	All beta proteins (6)
	Artifacts (4)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 113 Structures

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1A05 \| pdb_00001a05	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX OF 3-ISOPROPYLMALATE DEHYDROGENASE FROM THIOBACILLUS FERROOXIDANS WITH 3-ISOPROPYLMALATE

Imada, K., Inagaki, K., Matsunami, H., Kawaguchi, H., Tanaka, H., Tanaka, N., Namba, K.

(1998) Structure 6: 971-982

Released	1998-06-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acidithiobacillus ferrooxidans
Macromolecule	3-ISOPROPYLMALATE DEHYDROGENASE (protein)
Unique Ligands	IPM, MG

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1C1B \| pdb_00001c1b	Download File View File

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH GCA-186

Hopkins, A.L., Ren, J., Tanaka, H., Baba, B., Okamato, M., Stuart, D.I., Stammers, D.K.

(1999) J Med Chem 42: 4500-4505

Released	2000-07-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 REVERSE TRANSCRIPTASE (A-CHAIN) (protein) HIV-1 REVERSE TRANSCRIPTASE (B-CHAIN) (protein)
Unique Ligands	GCA

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1C1C \| pdb_00001c1c	Download File View File

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH TNK-6123

Hopkins, A.L., Ren, J., Tanaka, H., Baba, M., Okamato, M., Stuart, D.I., Stammers, D.K.

(1999) J Med Chem 42: 4500-4505

Released	2000-07-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 REVERSE TRANSCRIPTASE (A-CHAIN) (protein) HIV-1 REVERSE TRANSCRIPTASE (B-CHAIN) (protein)
Unique Ligands	612

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1GC0 \| pdb_00001gc0	Download File View File

CRYSTAL STRUCTURE OF THE PYRIDOXAL-5'-PHOSPHATE DEPENDENT L-METHIONINE GAMMA-LYASE FROM PSEUDOMONAS PUTIDA

Motoshima, H., Inagaki, K., Kumasaka, T., Furuichi, M., Inoue, H., Tamura, T., Esaki, N., Soda, K., Tanaka, N., Yamamoto, M., Tanaka, H.

(2000) J Biochem 128: 349-354

Released	2002-05-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas putida
Macromolecule	METHIONINE GAMMA-LYASE (protein)

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1GC2 \| pdb_00001gc2	Download File View File

CRYSTAL STRUCTURE OF THE PYRIDOXAL-5'-PHOSPHATE DEPENDENT L-METHIONINE GAMMA-LYASE FROM PSEUDOMONAS PUTIDA

Motoshima, H., Inagaki, K., Kumasaka, T., Furuichi, M., Inoue, H., Tamura, T., Esaki, N., Soda, K., Tanaka, N., Yamamoto, M., Tanaka, H.

(2000) J Biochem 128: 349-354

Released	2002-05-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas putida
Macromolecule	METHIONINE GAMMA-LYASE (protein)

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1IOF \| pdb_00001iof	Download File View File

X-RAY CRYSTALLINE STRUCTURES OF PYRROLIDONE CARBOXYL PEPTIDASE FROM A HYPERTHERMOPHILE, PYROCOCCUS FURIOSUS, AND ITS CYS-FREE MUTANT

Tanaka, H., Chinami, M., Ota, M., Tsukihara, T., Yutani, K.

(2001) J Biochem 130: 107-118

Released	2001-03-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus furiosus
Macromolecule	PYRROLIDONE CARBOXYL PEPTIDASE (protein)

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1IOI \| pdb_00001ioi	Download File View File

x-ray crystalline structures of pyrrolidone carboxyl peptidase from a hyperthermophile, pyrococcus furiosus, and its cys-free mutant

Tanaka, H., Chinami, M., Ota, M., Tsukihara, T., Yutani, K.

(2001) J Biochem 130: 107-118

Released	2001-03-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pyrococcus furiosus
Macromolecule	PYRROLIDONE CARBOXYL PEPTIDASE (protein)

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1UKJ \| pdb_00001ukj	Download File View File

Detailed structure of L-Methionine-Lyase from Pseudomonas putida

Misaki, S., Takimoto, A., Takakura, T., Yoshioka, T., Yamashita, M., Tamura, T., Tanaka, H., Inagaki, K.

To be published

Released	2004-10-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas putida
Macromolecule	Methionine gamma-lyase (protein)
Unique Ligands	SO4

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1V66 \| pdb_00001v66	Download File View File

Solution structure of human p53 binding domain of PIAS-1

Okubo, S., Hara, F., Tsuchida, Y., Shimotakahara, S., Suzuki, S., Hatanaka, H., Yokoyama, S., Tanaka, H., Yasuda, H., Shindo, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 31455-31461

Released	2004-12-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Protein inhibitor of activated STAT protein 1 (protein)

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1WUA \| pdb_00001wua	Download File View File

The structure of Aplyronine A-actin complex

Hirata, K., Muraoka, S., Suenaga, K., Kuroda, T., Kato, K., Tanaka, H., Yamamoto, M., Takata, M., Yamada, K., Kigoshi, H.

(2006) J Mol Biology 356: 945-954

Released	2006-02-14
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Actin, alpha skeletal muscle (protein)
Unique Ligands	AP8, ATP, CA

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2E0Z \| pdb_00002e0z	Download File View File

Crystal structure of virus-like particle from Pyrococcus furiosus

Akita, F., Chong, K.T., Tanaka, H., Yamashita, E., Miyazaki, N., Nakaishi, Y., Namba, K., Ono, Y., Suzuki, M., Tsukihara, T., Nakagawa, A.

(2007) J Mol Biology 368: 1469-1483

Released	2007-04-17
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Pyrococcus furiosus
Macromolecule	Virus-like particle (protein)

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2E1X \| pdb_00002e1x	Download File View File

NMR structure of the HIV-2 nucleocapsid protein

Matsui, T., Kodera, Y., Miyauchi, E., Tanaka, H., Endoh, H., Komatsu, H., Tanaka, T., Kohno, T., Maeda, T.

(2007) Biochem Biophys Res Commun 358: 673-678

Released	2007-06-05
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 2 subtype A (isolate Ghana-1)
Macromolecule	Gag-Pol polyprotein (Pr160Gag-Pol) (protein)
Unique Ligands	ZN

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2EC7 \| pdb_00002ec7	Download File View File

Solution Structure of Human Immunodificiency Virus Type-2 Nucleocapsid Protein

Matsui, T., Kodera, Y., Tanaka, T., Endoh, H., Tanaka, H., Miyauchi, E., Komatsu, H., Kohno, T., Maeda, T.

(2009) Biochemistry 48: 4314-4323

Released	2008-02-19
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 2 (ISOLATE GHANA-1)
Macromolecule	Gag polyprotein (Pr55Gag) (protein)
Unique Ligands	ZN

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2O7C \| pdb_00002o7c	Download File View File

Crystal structure of L-methionine-lyase from Pseudomonas

Misaki, S., Takimoto, A., Takakura, T., Yoshioka, T., Yamashita, M., Tamura, T., Tanaka, H., Inagaki, K.

(2007) J Biochem 141: 535-544

Released	2007-12-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas putida
Macromolecule	Methionine gamma-lyase (protein)
Unique Ligands	SO4

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2RSY \| pdb_00002rsy	Download File View File

Solution structure of the SH2 domain of Csk in complex with a phosphopeptide from Cbp

Tanaka, H., Akagi, K., Oneyama, C., Tanaka, M., Sasaki, Y., Kanou, T., Lee, Y., Yokogawa, D., Debenecker, M., Nakagawa, A., Okada, M., Ikegami, T.

(2013) J Biological Chem 288: 15240-15254

Released	2013-04-10
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	Phosphoprotein associated with glycosphingolipid-enriched microdomains 1 (protein) Tyrosine-protein kinase CSK (protein)

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3ANU \| pdb_00003anu	Download File View File

Crystal structure of D-serine dehydratase from chicken kidney

Tanaka, H., Senda, M., Venugopalan, N., Yamamoto, A., Senda, T., Ishida, T., Horiike, K.

(2011) J Biological Chem 286: 27548-27558

Released	2011-06-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus
Macromolecule	D-serine dehydratase (protein)
Unique Ligands	CL, PLP, ZN

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3ANV \| pdb_00003anv	Download File View File

Crystal structure of D-serine dehydratase from chicken kidney (2,3-DAP complex)

Tanaka, H., Senda, M., Venugopalan, N., Yamamoto, A., Senda, T., Ishida, T., Horiike, K.

(2011) J Biological Chem 286: 27548-27558

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Gallus gallus
Macromolecule	D-serine dehydratase (protein)
Unique Ligands	2RA, CL, PLP, ZN

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3ASI \| pdb_00003asi	Download File View File

Alpha-Neurexin-1 ectodomain fragment; LNS5-EGF3-LNS6

Tanaka, H., Nogi, T., Yasui, N., Takagi, J.

(2011) PLoS One 6: e19411-e19411

Released	2011-04-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus
Macromolecule	Neurexin-1-alpha (protein)
Unique Ligands	CA, NAG

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3AWN \| pdb_00003awn	Download File View File

Crystal structure of D-serine dehydratase from chicken kidney (EDTA treated)

Tanaka, H., Senda, M., Venugopalan, N., Yamamoto, A., Senda, T., Ishida, T., Horiike, K.

(2011) J Biological Chem 286: 27548-27558

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Gallus gallus
Macromolecule	D-serine dehydratase (protein)
Unique Ligands	PLP

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3AWO \| pdb_00003awo	Download File View File

Crystal structure of D-serine dehydratase in complex with D-serine from chicken kidney (EDTA-treated)

Tanaka, H., Senda, M., Venugopalan, N., Yamamoto, A., Senda, T., Ishida, T., Horiike, K.

(2011) J Biological Chem 286: 27548-27558

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Gallus gallus
Macromolecule	D-serine dehydratase (protein)
Unique Ligands	DSN, PLP

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3KLR \| pdb_00003klr	Download File View File

Bovine H-protein at 0.88 angstrom resolution

Higashiura, A., Kurakane, T., Matsuda, M., Suzuki, M., Inaka, K., Sato, M., Tanaka, H., Fujiwara, K., Nakagawa, A.

(2010) Acta Crystallogr D Biol Crystallogr 66: 698-708

Released	2010-06-09
Method	X-RAY DIFFRACTION 0.88 Å
Organisms	Bos taurus
Macromolecule	Glycine cleavage system H protein (protein)
Unique Ligands	GOL, SO4

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3VKF \| pdb_00003vkf	Download File View File

Crystal Structure of Neurexin 1beta/Neuroligin 1 complex

Tanaka, H., Miyazaki, N., Nogi, T., Iwasaki, K., Takagi, J.

(2012) Cell Rep 2: 101-110

Released	2012-08-01
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Bos taurus Rattus norvegicus
Macromolecule	Neurexin-1-beta (protein) Neuroligin-1 (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	BMA, NAG

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3X2L \| pdb_00003x2l	Download File View File

X-ray structure of PcCel45A apo form at 95K.

Nakamura, A., Ishida, T., Ohta, K., Tanaka, H., Inaka, K., Samejima, M., Igarashi, K.

(2015) Sci Adv 1: e1500263-e1500263

Released	2015-10-14
Method	X-RAY DIFFRACTION 0.83 Å
Organisms	Phanerodontia chrysosporium
Macromolecule	Endoglucanase V-like protein (protein)
Unique Ligands	40S, TRS

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3ZGF \| pdb_00003zgf	Download File View File

Crystal structure of the Fucosylgalactoside alpha N- acetylgalactosaminyltransferase (GTA, cisAB mutant L266G, G268A) in complex with in complex with NPE caged UDP-Gal (P2(1)2(1)2(1) space group)

Jorgensen, R., Batot, G.O., Hindsgaul, O., Tanaka, H., Perez, S., Imberty, A., Breton, C., Royant, A., Palcic, M.M.

(2014) Acta Crystallogr Sect F Struct Biol Cryst Commun 70: 1015

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.701 Å
Organisms	Homo sapiens
Macromolecule	HISTO-BLOOD GROUP ABO SYSTEM TRANSFERASE (protein)
Unique Ligands	IUG, MN, SO4, UDP

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3ZGG \| pdb_00003zgg	Download File View File

Crystal structure of the Fucosylgalactoside alpha N- acetylgalactosaminyltransferase (GTA, cisAB mutant L266G, G268A) in complex with NPE caged UDP-Gal (C222(1) space group)

Jorgensen, R., Batot, G.O., Hindsgaul, O., Tanaka, H., Perez, S., Imberty, A., Breton, C., Royant, A., Palcic, M.M.

(2014) Acta Crystallogr Sect F Struct Biol Cryst Commun 70: 1015

Released	2014-01-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	HISTO-BLOOD GROUP ABO SYSTEM TRANSFERASE (protein)
Unique Ligands	GOL, IUG, MN

1 to 25 of 113 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A05 | pdb_00001a05

1C1B | pdb_00001c1b

1C1C | pdb_00001c1c

1GC0 | pdb_00001gc0

1GC2 | pdb_00001gc2

1IOF | pdb_00001iof

1IOI | pdb_00001ioi

1UKJ | pdb_00001ukj

1V66 | pdb_00001v66

1WUA | pdb_00001wua

2E0Z | pdb_00002e0z

2E1X | pdb_00002e1x

2EC7 | pdb_00002ec7

2O7C | pdb_00002o7c

2RSY | pdb_00002rsy

3ANU | pdb_00003anu

3ANV | pdb_00003anv

3ASI | pdb_00003asi

3AWN | pdb_00003awn

3AWO | pdb_00003awo

3KLR | pdb_00003klr

3VKF | pdb_00003vkf

3X2L | pdb_00003x2l

3ZGF | pdb_00003zgf

3ZGG | pdb_00003zgg