RCSB PDB: Search

2YWQ	Download File View File

Crystal structure of Thermus thermophilus Protein Y N-terminal domain

Kawazoe, M., Takemoto, C., Kaminishi, T., Tatsuguchi, A., Saito, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-04-15
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Ribosomal subunit interface protein (protein)

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5GK0	Download File View File

Crystal structure of selnomethionin-labeled ketosynthase StlD

Mori, T., Saito, Y., Morita, H., Abe, I.

(2016) Cell Chem Biol 23: 1468-1479

Released	2017-07-05
Method	X-RAY DIFFRACTION 2.331 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Ketosynthase StlD (protein)

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5GK1	Download File View File

Crystal structure of the ketosynthase StlD complexed with substrate

Mori, T., Saito, Y., Morita, H., Abe, I.

(2016) Cell Chem Biol 23: 1468-1479

Released	2017-07-05
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Ketosynthase StlD (protein)
Unique Ligands	2K3

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5H5G	Download File View File

Staphylococcus aureus FtsZ-GDP in T and R states

Fujita, J., Harada, R., Maeda, Y., Saito, Y., Mizohata, E., Inoue, T., Shigeta, Y., Matsumura, H.

(2017) J Struct Biol 198: 65-73

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Cell division protein FtsZ (protein)
Unique Ligands	CA, GDP

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5H5H	Download File View File

Staphylococcus aureus FtsZ-GDP R29A mutant in T state

Fujita, J., Harada, R., Maeda, Y., Saito, Y., Mizohata, E., Inoue, T., Shigeta, Y., Matsumura, H.

(2017) J Struct Biol 198: 65-73

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Cell division protein FtsZ (protein)
Unique Ligands	CA, GDP

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5H5I	Download File View File

Staphylococcus aureus FtsZ-GDP R29A mutant in R state

Fujita, J., Harada, R., Maeda, Y., Saito, Y., Mizohata, E., Inoue, T., Shigeta, Y., Matsumura, H.

(2017) J Struct Biol 198: 65-73

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Cell division protein FtsZ (protein)
Unique Ligands	GDP

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5Z0X	Download File View File

X-ray Crystal Structure of Pseudoazurin Met16Tyr Variant

Saito, Y., Yamaguchi, T., Kohzuma, T.

To be published

Released	2018-12-26
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Achromobacter cycloclastes
Macromolecule	Pseudoazurin (protein)
Unique Ligands	CU, GOL

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5ZE9	Download File View File

Crystal structure of AMP-PNP bound mutant A3B3 complex from Enterococcus hirae V-ATPase

Maruyama, S., Suzuki, K., Sasaki, H., Mizutani, K., Saito, Y., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Ichiro, Y., Murata, T.

(2019) Sci Adv 5: eaau8149-eaau8149

Released	2019-02-06
Method	X-RAY DIFFRACTION 2.102 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	V-type sodium ATPase catalytic subunit A (protein) V-type sodium ATPase subunit B (protein)
Unique Ligands	ANP, GOL, MES, MG

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5ZEA	Download File View File

Crystal structure of the nucleotide-free mutant A3B3

Maruyama, S., Suzuki, K., Mizutani, K., Saito, Y., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Ichiro, Y., Murata, T.

(2019) Sci Adv 5: eaau8149-eaau8149

Released	2019-02-06
Method	X-RAY DIFFRACTION 3.384 Å
Organisms	Enterococcus hirae ATCC 9790
Macromolecule	V-type sodium ATPase catalytic subunit A (protein) V-type sodium ATPase subunit B (protein)
Unique Ligands	GOL

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7ETN	Download File View File

Crystal structure of Pro-Phe-Leu-Ile

Kurumida, Y., Ikeda, K., Nakamichi, Y., Hirano, A., Kobayashi, K., Saito, Y., Kameda, T.

To be published

Released	2022-05-25
Method	X-RAY DIFFRACTION 0.82 Å
Organisms	synthetic construct
Macromolecule	PRO-PHE-LEU-ILE (protein)

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7ETP	Download File View File

Crystal structure of Pro-Phe-Leu-Phe

Kurumida, Y., Ikeda, K., Nakamichi, Y., Hirano, A., Kobayashi, K., Saito, Y., Kameda, T.

To be published

Released	2022-05-18
Method	X-RAY DIFFRACTION 1.09488 Å
Organisms	synthetic construct
Macromolecule	Pro-Phe-Leu-Phe (protein)

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7ETQ	Download File View File

Crystal structure of Pro-Met-Leu-Leu

Kurumida, Y., Ikeda, K., Nakamichi, Y., Hirano, A., Kobayashi, K., Saito, Y., Kameda, T.

To be published

Released	2022-05-18
Method	X-RAY DIFFRACTION 1.04 Å
Organisms	synthetic construct
Macromolecule	Pro-Met-Leu-Leu (protein)

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7P65	Download File View File

Progressive supranuclear palsy tau filament

Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.

(2021) Nature 598: 359-363

Released	2021-09-15
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated protein tau (protein)

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7P66	Download File View File

Globular glial tauopathy type 1 tau filament

Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.

(2021) Nature 598: 359-363

Released	2021-09-15
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated protein tau (protein)

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7P67	Download File View File

Globular glial tauopathy type 2 tau filament

Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.

(2021) Nature 598: 359-363

Released	2021-09-15
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated protein tau (protein)

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7P68	Download File View File

Globular glial tauopathy type 3 tau filament

Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.

(2021) Nature 598: 359-363

Released	2021-09-15
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated protein tau (protein)

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7P6A	Download File View File

Limbic-predominant neuronal inclusion body 4R tauopathy type 1a tau filament

Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.

(2021) Nature 598: 359-363

Released	2021-09-15
Method	ELECTRON MICROSCOPY 1.9 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated protein tau (protein)

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7P6B	Download File View File

Limbic-predominant neuronal inclusion body 4R tauopathy type 1b tau filament

Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.

(2021) Nature 598: 359-363

Released	2021-09-15
Method	ELECTRON MICROSCOPY 2.2 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated protein tau (protein)

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7P6C	Download File View File

Limbic-predominant neuronal inclusion body 4R tauopathy type 2 tau filament

Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.

(2021) Nature 598: 359-363

Released	2021-09-15
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated protein tau (protein)

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7P6D	Download File View File

Argyrophilic grain disease type 1 tau filament

Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.

(2021) Nature 598: 359-363

Released	2021-09-15
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated protein tau (protein)

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7P6E	Download File View File

Argyrophilic grain disease type 2 tau filament

Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.

(2021) Nature 598: 359-363

Released	2021-09-15
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated protein tau (protein)

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8A9L	Download File View File

Cryo-EM structure of alpha-synuclein filaments from Parkinson's disease and dementia with Lewy bodies

Yang, Y., Shi, Y., Schweighauser, M., Zhang, X.J., Kotecha, A., Murzin, A.G., Garringer, H.J., Cullinane, P., Saito, Y., Foroud, T., Warner, T.T., Hasegawa, K., Vidal, R., Murayama, S., Revesz, T., Ghetti, B., Hasegawa, M., Lashley, T., Scheres, H.W.S., Goedert, M.

(2022) Nature 610: 791-795

Released	2022-08-31
Method	ELECTRON MICROSCOPY 2.2 Å
Organisms	Homo sapiens
Macromolecule	Alpha-synuclein (protein) Unknown fragment (protein)

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