Download MendeleyX-ray Crystal Structure of Pseudoazurin Met16Tyr Variant
Yamaguchi, T., Saito, Y., Kohzuma, T.To be published.
5Z0X | pdb_00005z0x
X-ray Crystal Structure of Pseudoazurin Met16Tyr Variant
- PDB DOI: https://doi.org/10.2210/pdb5Z0X/pdb
- Classification: ELECTRON TRANSPORT
- Organism(s): Achromobacter cycloclastes
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2017-12-22 Released: 2018-12-26
- Funding Organization(s): Japan Society for the Promotion of Science
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.46 Å
- R-Value Free: 0.191 (Depositor), 0.190 (DCC)
- R-Value Work: 0.146 (Depositor), 0.150 (DCC)
- R-Value Observed: 0.148 (Depositor)
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Pseudoazurin | 124 | Achromobacter cycloclastes | Mutation(s): 1 Gene Names: bcp |  | |
UniProt | |||||
Find proteins for P19567 (Achromobacter cycloclastes) Explore P19567 Go to UniProtKB: P19567 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P19567 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | D [auth A], F [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CU (Subject of Investigation/LOI) Query on CU | C [auth A], E [auth B] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.46 Å
- R-Value Free: 0.191 (Depositor), 0.190 (DCC)
- R-Value Work: 0.146 (Depositor), 0.150 (DCC)
- R-Value Observed: 0.148 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 34.54 | α = 90 |
| b = 59.03 | β = 105.56 |
| c = 54 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| SCALA | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-12-26 Deposition Author(s): Saito, Y., Yamaguchi, T., Kohzuma, T.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Japan Society for the Promotion of Science | Japan | 22550145 |
Revision History (Full details and data files)
- Version 1.0: 2018-12-26
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
