Download MendeleyX-Ray Structural Insights into a Phosphotriesterase
Larsen, S.D., Hawwa, R., Ratia, K., Santarsiero, B.D., Mesecar, A.D.To be published.
2ZC1 | pdb_00002zc1
Organophosphorus Hydrolase from Deinococcus radiodurans
- PDB DOI: https://doi.org/10.2210/pdb2ZC1/pdb
- Classification: HYDROLASE
- Organism(s): Deinococcus radiodurans
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-11-02 Released: 2008-11-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.212 (Depositor), 0.207 (DCC)
- R-Value Work: 0.182 (Depositor), 0.178 (DCC)
- R-Value Observed: 0.182 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphotriesterase | 333 | Deinococcus radiodurans | Mutation(s): 0 EC: 3.1.8.1 |  | |
UniProt | |||||
Find proteins for Q9RVU2 (Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)) Explore Q9RVU2 Go to UniProtKB: Q9RVU2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9RVU2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BR Query on BR | B [auth A], C [auth A], D [auth A], E [auth A] | BROMIDE ION Br CPELXLSAUQHCOX-UHFFFAOYSA-M |  | ||
| CO Query on CO | F [auth A], G [auth A] | COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| KCX Query on KCX | A | L-PEPTIDE LINKING | C7 H14 N2 O4 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.212 (Depositor), 0.207 (DCC)
- R-Value Work: 0.182 (Depositor), 0.178 (DCC)
- R-Value Observed: 0.182 (Depositor)
Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.843 | α = 90 |
| b = 60.843 | β = 90 |
| c = 207.694 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SOLVE | phasing |
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2008-11-25 Deposition Author(s): Larsen, S.D., Hawwa, R., Ratia, K., Santarsiero, B.D., Mesecar, A.D.
Revision History (Full details and data files)
- Version 1.0: 2008-11-25
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2025-03-26
Changes: Data collection, Database references, Derived calculations, Structure summary
