Download MendeleyPSL synthase from Bacillus subtilis
Cuff, M.E., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A.To be published.
1U83 | pdb_00001u83
PSL synthase from Bacillus subtilis
- PDB DOI: https://doi.org/10.2210/pdb1U83/pdb
- Classification: LYASE
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli BL21
- Mutation(s): Yes
- Deposited: 2004-08-04 Released: 2004-09-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.219 (Depositor), 0.218 (DCC)
- R-Value Work: 0.188 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.192 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphosulfolactate synthase | 276 | Bacillus subtilis | Mutation(s): 3 Gene Names: comA EC: 4.4.1.19 |  | |
UniProt | |||||
Find proteins for O06739 (Bacillus subtilis (strain 168)) Explore O06739 Go to UniProtKB: O06739 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O06739 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | B [auth A], C [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| GOL Query on GOL | D [auth A], E [auth A], F [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.219 (Depositor), 0.218 (DCC)
- R-Value Work: 0.188 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.192 (Depositor)
Space Group: P 21 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 92.071 | α = 90 |
| b = 92.071 | β = 90 |
| c = 92.071 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-2000 | data reduction |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | model building |
| CNS | refinement |
| HKL-2000 | data scaling |
| DM | phasing |
Entry History
Deposition Data
- Released Date: 2004-09-14 Deposition Author(s): Cuff, M.E., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2004-09-14
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2012-09-26
Changes: Structure summary - Version 1.4: 2017-10-11
Changes: Refinement description - Version 1.5: 2024-10-16
Changes: Data collection, Database references, Derived calculations, Structure summary
