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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Cellvibrio japonicus"

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Search Summary

This query matches 89 Structures.

Refinements

Structure Determination Methodology

experimental (89)

Scientific Name of Source Organism

	Cellvibrio japonicus (53)
	Cellvibrio japonicus Ueda107 (36)

Taxonomy

Bacteria (89)

Experimental Method

	X-RAY DIFFRACTION (85)
	SOLUTION NMR (4)

Polymer Entity Type

Protein (89)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (56)
	2.0 - 2.5 (9)
	2.5 - 3.0 (7)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (23)
	2005 - 2009 (12)
	2010 - 2014 (17)
	2015 - 2019 (17)
	2020 - 2024 (18)

Enzyme Classification Name

	Hydrolases (66)
	Transferases (13)
	Lyases (5)

Symmetry Type

	Asymmetric (74)
	Cyclic (13)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (30)
	All beta proteins (14)
	Alpha and beta proteins (a+b) (7)
	Artifacts (4)
	All alpha proteins (3)

AllSelected

1 to 25 of 89 Structures

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1CLX \| pdb_00001clx	Download File View File

CATALYTIC CORE OF XYLANASE A

Harris, G.W., Jenkins, J.A., Connerton, I., Pickersgill, R.W.

(1996) Acta Crystallogr D Biol Crystallogr 52: 393-401

Released	1996-06-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Cellvibrio japonicus
Macromolecule	XYLANASE A (protein)
Unique Ligands	CA

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1GNY \| pdb_00001gny	Download File View File

xylan-binding module CBM15

Szabo, S., Jamal, S., Xie, H., Charnock, S.J., Bolam, D.N., Gilbert, H.J., Davies, G.J.

(2001) J Biological Chem 276: 49061

Released	2001-11-29
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Cellvibrio japonicus
Macromolecule	XYLANASE 10C (protein)
Unique Ligands	NA
Unique branched monosaccharides	XYP

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1GQI \| pdb_00001gqi	Download File View File

Structure of Pseudomonas cellulosa alpha-D-glucuronidase

Nurizzo, D., Nagy, T., Gilbert, H.J., Davies, G.J.

(2002) Structure 10: 547

Released	2002-09-26
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Cellvibrio japonicus
Macromolecule	ALPHA-GLUCURONIDASE (protein)
Unique Ligands	CO, EDO, MG

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1GQJ \| pdb_00001gqj	Download File View File

Structure of Pseudomonas cellulosa alpha-D-glucuronidase complexed with xylobiose

Nurizzo, D., Nagy, T., Gilbert, H.J., Davies, G.J.

(2002) Structure 10: 547

Released	2002-09-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cellvibrio japonicus
Macromolecule	ALPHA-D-GLUCURONIDASE (protein)
Unique Ligands	CO, EDO
Unique branched monosaccharides	XYP

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1GQK \| pdb_00001gqk	Download File View File

Structure of Pseudomonas cellulosa alpha-D-glucuronidase complexed with glucuronic acid

Nurizzo, D., Nagy, T., Gilbert, H.J., Davies, G.J.

(2002) Structure 10: 547

Released	2002-09-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cellvibrio japonicus
Macromolecule	ALPHA-D-GLUCURONIDASE (protein)
Unique Ligands	BDP, CO, EDO

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1GQL \| pdb_00001gql	Download File View File

Structure of Pseudomonas cellulosa alpha-D-glucuronidase complexed with glucuronic acid and xylotriose

Nurizzo, D., Nagy, T., Gilbert, H.J., Davies, G.J.

(2002) Structure 10: 547

Released	2002-09-26
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Cellvibrio japonicus
Macromolecule	ALPHA-D-GLUCURONIDASE (protein)
Unique Ligands	BDP, CO, EDO
Unique branched monosaccharides	XYP

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1GVY \| pdb_00001gvy	Download File View File

Substrate distorsion by beta-mannanase from Pseudomonas cellulosa

Ducros, V., Zechel, D.L., Gilbert, H.J., Szabo, L., Withers, S.G., Davies, G.J.

(2002) Angew Chem Int Ed Engl 41: 2824

Released	2002-09-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Cellvibrio japonicus
Macromolecule	MANNAN ENDO-1,4-BETA-MANNOSIDASE (protein)
Unique Ligands	NA, NIN, TRS, ZN
Unique branched monosaccharides	BMA, MBF

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1GW1 \| pdb_00001gw1	Download File View File

Substrate distortion by beta-mannanase from Pseudomonas cellulosa

Ducros, V., Zechel, D.L., Gilbert, H.J., Szabo, L., Withers, S.G., Davies, G.J.

(2002) Angew Chem Int Ed Engl 41: 2824

Released	2002-09-05
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Cellvibrio japonicus
Macromolecule	MANNAN ENDO-1,4-BETA-MANNOSIDASE (protein)
Unique Ligands	NA, NIN, TRS, ZN
Unique branched monosaccharides	BMA, MAF, MBF

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1GXM \| pdb_00001gxm	Download File View File

Family 10 polysaccharide lyase from Cellvibrio cellulosa

Charnock, S.J., Brown, I.E., Turkenburg, J.P., Black, G.W., Davies, G.J.

(2002) Proc Natl Acad Sci U S A 99: 12067

Released	2002-10-04
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Cellvibrio japonicus
Macromolecule	PECTATE LYASE (protein)
Unique Ligands	GOL

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1GXN \| pdb_00001gxn	Download File View File

Family 10 polysaccharide lyase from Cellvibrio cellulosa

Charnock, S.J., Brown, I.E., Turkenburg, J.P., Black, G.W., Davies, G.J.

(2002) Proc Natl Acad Sci U S A 99: 12067

Released	2002-10-04
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Cellvibrio japonicus
Macromolecule	PECTATE LYASE (protein)

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1GXO \| pdb_00001gxo	Download File View File

Mutant D189A of Family 10 polysaccharide lyase from Cellvibrio cellulosa in complex with trigalaturonic acid

Charnock, S.J., Brown, I.E., Turkenburg, J.P., Black, G.W., Davies, G.J.

(2002) Proc Natl Acad Sci U S A 99: 12067

Released	2002-10-04
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Cellvibrio japonicus
Macromolecule	PECTATE LYASE (protein)
Unique Ligands	CA
Unique branched monosaccharides	ADA

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1GYD \| pdb_00001gyd	Download File View File

Structure of Cellvibrio cellulosa alpha-L-arabinanase

Nurizzo, D., Turkenburg, J.P., Charnock, S.J., Roberts, S.M., Dodson, E.J., McKie, V.A., Taylor, E.J., Gilbert, H.J., Davies, G.J.

(2002) Nat Struct Biol 9: 665-668

Released	2002-08-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Cellvibrio japonicus
Macromolecule	ARABINAN ENDO-1,5-ALPHA-L-ARABINOSIDASE A (protein)

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1GYE \| pdb_00001gye	Download File View File

Structure of Cellvibrio cellulosa alpha-L-arabinanase complexed with Arabinohexaose

Nurizzo, D., Turkenburg, J.P., Charnock, S.J., Roberts, S.M., Dodson, E.J., McKie, V.A., Taylor, E.J., Gilbert, H.J., Davies, G.J.

(2002) Nat Struct Biol 9: 665-668

Released	2002-08-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Cellvibrio japonicus
Macromolecule	ARABINAN ENDO-1,5-ALPHA-L-ARABINOSIDASE A (protein)
Unique Ligands	CL
Unique branched monosaccharides	AHR

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1GYH \| pdb_00001gyh	Download File View File

Structure of D158A Cellvibrio cellulosa alpha-L-arabinanase mutant

Nurizzo, D., Turkenburg, J.P., Charnock, S.J., Roberts, S.M., Dodson, E.J., McKie, V.A., Taylor, E.J., Gilbert, H.J., Davies, G.J.

(2002) Nat Struct Biol 9: 665

Released	2002-08-23
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Cellvibrio japonicus
Macromolecule	ARABINAN ENDO-1,5-ALPHA-L-ARABINOSIDASE A (protein)
Unique Ligands	CL

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1H41 \| pdb_00001h41	Download File View File

Pseudomonas cellulosa E292A alpha-D-glucuronidase mutant complexed with aldotriuronic acid

Nurizzo, D., Nagy, T., Gilbert, H.J., Davies, G.J.

(2003) J Biological Chem 278: 20286

Released	2003-05-01
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Cellvibrio japonicus
Macromolecule	ALPHA-GLUCURONIDASE (protein)
Unique Ligands	CO, EDO, GCV

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1J9Y \| pdb_00001j9y	Download File View File

Crystal structure of mannanase 26A from Pseudomonas cellulosa

Hogg, D., Woo, E.-J., Bolam, D.N., McKie, V.A., Gilbert, H.J., Pickersgill, R.W.

(2001) J Biological Chem 276: 31186-31192

Released	2001-06-20
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Cellvibrio japonicus
Macromolecule	MANNANASE A (protein)
Unique Ligands	ZN

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1ODZ \| pdb_00001odz	Download File View File

Expansion of the glycosynthase repertoire to produce defined manno-oligosaccharides

Jahn, M., Stoll, D., Warren, R.A.J., Szabo, L., Singh, P., Gilbert, H.J., Ducros, V.M.A., Davies, G.J., Withers, S.G.

(2003) Chem Commun (Camb) 12: 1327-1329

Released	2003-07-10
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Cellvibrio japonicus
Macromolecule	Mannan endo-1,4-beta-mannosidase (protein)
Unique Ligands	NA, TRS, ZN
Unique branched monosaccharides	BMA, MAN

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1R7O \| pdb_00001r7o	Download File View File

Crystal Structure of apo-mannanase 26A from Psudomonas cellulosa

Oakley, A.J., Wilce, M.C.J.

To be published

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Cellvibrio japonicus
Macromolecule	mannanase A (protein)
Unique Ligands	MES, SO4, ZN

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1US2 \| pdb_00001us2	Download File View File

Xylanase10C (mutant E385A) from Cellvibrio japonicus in complex with xylopentaose

Pell, G., Szabo, L., Charnock, S.J., Xie, H., Gloster, T.M., Davies, G.J., Gilbert, H.J.

(2004) J Biological Chem 279: 11777

Released	2003-12-18
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Cellvibrio japonicus
Macromolecule	ENDO-BETA-1,4-XYLANASE (protein)
Unique branched monosaccharides	XYP

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1US3 \| pdb_00001us3	Download File View File

Native xylanase10C from Cellvibrio japonicus

Pell, G., Szabo, L., Charnock, S.J., Xie, H., Gloster, T.M., Davies, G.J., Gilbert, H.J.

(2004) J Biological Chem 279: 11777

Released	2003-12-18
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Cellvibrio japonicus
Macromolecule	ENDO-BETA-1,4-XYLANASE PRECURSOR (protein)
Unique Ligands	GOL, NA, TRS

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1W2P \| pdb_00001w2p	Download File View File

The 3-dimensional structure of a xylanase (Xyn10A) from Cellvibrio japonicus

Taylor, E.J., Vincent, F., Gilbert, H.J., Davies, G.J.

(2004) J Biological Chem 279: 54369

Released	2004-09-30
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Cellvibrio japonicus
Macromolecule	ENDO-1,4-BETA-XYLANASE A PRECURSOR (protein)
Unique Ligands	CA, EDO

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1W2V \| pdb_00001w2v	Download File View File

The 3-dimensional structure of a thermostable mutant of a xylanase (Xyn10A) from Cellvibrio japonicus

Andrews, S., Taylor, E.J., Pell, G.N., Vincent, F., Ducros, V.M.A., Davies, G.J., Lakey, J.H., Glbert, H.J.

(2004) J Biological Chem 279: 54369

Released	2004-09-30
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Cellvibrio japonicus
Macromolecule	ENDO-1,4-BETA-XYLANASE A PRECURSOR (protein)
Unique Ligands	CA, EDO

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1W32 \| pdb_00001w32	Download File View File

The 3-dimensional structure of a thermostable mutant of a xylanase (Xyn10A) from Cellvibrio japonicus

Andrews, S., Taylor, E.J., Pell, G.N., Vincent, F., Ducros, V.M.A., Davies, G.J., Lakey, J.H., Gilbert, H.J.

(2004) J Biological Chem 279: 54369

Released	2004-09-30
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Cellvibrio japonicus
Macromolecule	ENDO-1,4-BETA-XYLANASE A PRECURSOR (protein)
Unique Ligands	CA, EDO

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1W3H \| pdb_00001w3h	Download File View File

The 3-dimensional structure of a thermostable mutant of a xylanase (Xyn10A) from Cellvibrio japonicus

Andrews, S., Taylor, E.J., Pell, G.N., Vincent, F., Ducros, V.M.A., Davies, G.J., Lakey, J.H., Glbert, H.J.

(2004) J Biological Chem 279: 54369

Released	2004-09-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Cellvibrio japonicus
Macromolecule	ENDO-1,4-BETA-XYLANASE A PRECURSOR (protein)
Unique Ligands	CA, EDO