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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = MLI

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Search Summary

This query matches 919 Structures.

Refinements

Structure Determination Methodology

experimental (919)

Scientific Name of Source Organism

	Homo sapiens (438)
	Escherichia coli K-12 (40)
	Achromobacter cycloclastes (22)
	Arabidopsis thaliana (19)
	synthetic construct (18)
	Escherichia coli (13)
	Rattus norvegicus (13)
	Ascaris suum (11)
	Gallus gallus (11)
	Mus musculus (11)

More...

Taxonomy

	Eukaryota (605)
	Bacteria (294)
	other sequences (18)
	Riboviria (12)
	Archaea (8)
	Duplodnaviria (4)
	Adnaviria (2)
	Eukaryota (eukaryotes) (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (917)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (919)
	RNA (8)
	DNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (203)
	1.5 - 2.0 (372)
	2.0 - 2.5 (219)
	2.5 - 3.0 (91)
	3.0 - 3.5 (26)
	3.5 - 4.0 (2)
	4.0 - 4.5 (3)

Release Date

	1990 - 1994 (1)
	2000 - 2004 (6)
	2005 - 2009 (58)
	2010 - 2014 (146)
	2015 - 2019 (525)
	2020 - 2024 (173)
	2025 - 2029 (10)

Enzyme Classification Name

	Hydrolases (471)
	Oxidoreductases (102)
	Transferases (90)
	Lyases (46)
	Ligases (16)
	Isomerases (12)

Membrane Protein Annotation

	MemProtMD (24)
	PDBTM (24)
	mpstruc (4)
	OPM (4)

Symmetry Type

	Asymmetric (654)
	Cyclic (212)
	Dihedral (75)
	Octahedral (2)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (393)
	Alpha and beta proteins (a/b) (102)
	Artifacts (61)
	All beta proteins (50)
	All alpha proteins (41)
	Multi-domain proteins (alpha and beta) (6)
	Small proteins (4)
	Membrane and cell surface proteins and peptides (5)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 919 Structures

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1AT1 \| pdb_00001at1	Download File View File

CRYSTAL STRUCTURES OF PHOSPHONOACETAMIDE LIGATED T AND PHOSPHONOACETAMIDE AND MALONATE LIGATED R STATES OF ASPARTATE CARBAMOYLTRANSFERASE AT 2.8-ANGSTROMS RESOLUTION AND NEUTRAL P*H

Gouaux, J.E., Lipscomb, W.N.

(1990) Biochemistry 29: 389-402

Released	1990-10-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN (protein) ASPARTATE CARBAMOYLTRANSFERASE, CATALYTIC CHAIN (protein)
Unique Ligands	MLI, PCT, ZN

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1SC3 \| pdb_00001sc3	Download File View File

Crystal structure of the human caspase-1 C285A mutant in complex with malonate

Romanowski, M.J., Scheer, J.M., O'Brien, T., McDowell, R.S.

(2004) Structure 12: 1361-1371

Released	2004-08-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-1 beta convertase (protein)
Unique Ligands	MLI

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1SKU \| pdb_00001sku	Download File View File

E. coli Aspartate Transcarbamylase 240's Loop Mutant (K244N)

Alam, N., Stieglitz, K.A., Caban, M.D., Gourinath, S., Tsuruta, H., Kantrowitz, E.R.

(2004) J Biological Chem 279: 23302-23310

Released	2004-03-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	Aspartate carbamoyltransferase catalytic chain (protein) Aspartate carbamoyltransferase regulatory chain (protein)
Unique Ligands	MLI, ZN

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1T9F \| pdb_00001t9f	Download File View File

Structural genomics of Caenorhabditis elegans: Structure of a protein with unknown function

Symersky, J., Li, S., Bunzel, R., Schormann, N., Luo, D., Huang, W.Y., Qiu, S., Gray, R., Zhang, Y., Arabashi, A., Lu, S., Luan, C.H., Tsao, J., DeLucas, L., Luo, M., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2004-05-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Caenorhabditis elegans
Macromolecule	protein 1d10 (protein)
Unique Ligands	MLI

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1TUG \| pdb_00001tug	Download File View File

Aspartate Transcarbamoylase Catalytic Chain Mutant E50A Complex with Phosphonoacetamide, Malonate, and Cytidine-5-Prime-Triphosphate (CTP)

Stieglitz, K., Stec, B., Baker, D.P., Kantrowitz, E.R.

(2004) J Mol Biology 341: 853-868

Released	2004-07-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	Aspartate carbamoyltransferase catalytic chain (protein) Aspartate carbamoyltransferase regulatory chain (protein)
Unique Ligands	CTP, MLI, PCT, ZN

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1UFY \| pdb_00001ufy	Download File View File

Crystal analysis of chorismate mutase from thermus thermophilus

Inagaki, E., Miyano, M., Tahirov, T.H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2003-07-01
Method	X-RAY DIFFRACTION 0.96 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Chorismate mutase (protein)
Unique Ligands	CL, MES, MLI

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1VCY \| pdb_00001vcy	Download File View File

VVA2 isoform

Lin, S.-C., Lo, Y.-C., Lin, J.-Y., Liaw, Y.-C.

(2004) J Mol Biology 343: 477-491

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Volvariella volvacea
Macromolecule	volvatoxin A2 (protein)
Unique Ligands	MLI

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2AAL \| pdb_00002aal	Download File View File

Crystal Structures of the Wild-type, Mutant-P1A and Inactivated Malonate Semialdehyde Decarboxylase: A Structural Basis for the Decarboxylase and Hydratase Activities

Almrud, J.J., Poelarends, G.J., Johnson Jr., W.H., Serrano, H., Hackert, M.L., Whitman, C.P.

(2005) Biochemistry 44: 14818-14827

Released	2005-11-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pseudomonas pavonaceae
Macromolecule	Malonate semialdehyde decarboxylase (protein)
Unique Ligands	MLI

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2B0U \| pdb_00002b0u	Download File View File

The Structure of the Follistatin:Activin Complex

Thompson, T.B., Lerch, T.F., Cook, R.W., Woodruff, T.K., Jardetzky, T.S.

(2005) Dev Cell 9: 535-543

Released	2005-10-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Follistatin (protein) Inhibin beta A chain (protein)
Unique Ligands	IR3, MLI, MPD

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2B4P \| pdb_00002b4p	Download File View File

Structure of the D223N mutant of Selenomonas ruminantium PTP-like phytase

Gruninger, R.J., Selinger, L.B., Mosimann, S.C.

(2007) Protein Sci 16: 1368-1378

Released	2006-11-07
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Selenomonas ruminantium
Macromolecule	myo-inositol hexaphosphate phosphohydrolase (protein)
Unique Ligands	CL, MLI

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2B4U \| pdb_00002b4u	Download File View File

Structure of the C252S mutant of Selenomonas ruminantium PTP-like phytase

Gruninger, R.J., Selinger, L.B., Mosimann, S.C.

(2007) Protein Sci 16: 1368-1378

Released	2006-11-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Selenomonas ruminantium
Macromolecule	myo-inositol hexaphosphate phosphohydrolase (protein)
Unique Ligands	CL, MLI, SO4

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2BW4 \| pdb_00002bw4	Download File View File

Atomic Resolution Structure of Resting State of the Achromobacter cycloclastes Cu Nitrite Reductase

Antonyuk, S.V., Strange, R.W., Sawers, G., Eady, R.R., Hasnain, S.S.

(2005) Proc Natl Acad Sci U S A 102: 12041

Released	2005-08-17
Method	X-RAY DIFFRACTION 0.9 Å
Organisms	Achromobacter cycloclastes
Macromolecule	COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	ACT, CU, MLI, SO4

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2BW5 \| pdb_00002bw5	Download File View File

Atomic Resolution Structure of NO-bound Achromobacter cycloclastes Cu Nitrite Reductase

Antonyuk, S.V., Strange, R.W., Sawers, G., Eady, R.R., Hasnain, S.S.

(2005) Proc Natl Acad Sci U S A 102: 12041

Released	2005-08-17
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Achromobacter cycloclastes
Macromolecule	COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	ACT, CU, HOA, MLI, PO4

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2BWD \| pdb_00002bwd	Download File View File

Atomic Resolution Structure of Achromobacter cycloclastes Cu Nitrite Reductase with Endogenously bound Nitrite and NO

Antonyuk, S.V., Strange, R.W., Sawers, G., Eady, R.R., Hasnain, S.S.

(2005) Proc Natl Acad Sci U S A 102: 12041

Released	2005-08-17
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Achromobacter cycloclastes
Macromolecule	COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	ACT, CU, HOA, MLI, NO2

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2BWI \| pdb_00002bwi	Download File View File

Atomic Resolution Structure of Nitrite -soaked Achromobacter cycloclastes Cu Nitrite Reductase

Antonyuk, S.V., Strange, R.W., Sawers, G., Eady, R.R., Hasnain, S.S.

(2005) Proc Natl Acad Sci U S A 102: 12041

Released	2005-08-17
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Achromobacter cycloclastes
Macromolecule	COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	ACT, CU, MLI, NO2

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2C95 \| pdb_00002c95	Download File View File

Structure of adenylate kinase 1 in complex with P1,P4-di(adenosine) tetraphosphate

Bunkoczi, G., Filippakopoulos, P., Jansson, A., Longman, E., von Delft, F., Edwards, A., Arrowsmith, C., Sundstrom, M., Knapp, S.

To be published

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	ADENYLATE KINASE 1 (protein)
Unique Ligands	B4P, MLI

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2FTW \| pdb_00002ftw	Download File View File

Crystal structure of dihydropyrimidinase from dictyostelium discoideum

Lohkamp, B., Dobritzsch, D.

(2006) J Biological Chem 281: 13762-13776

Released	2006-03-14
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Dictyostelium discoideum
Macromolecule	dihydropyrimidine amidohydrolase (protein)
Unique Ligands	MLI, ZN

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2G2Y \| pdb_00002g2y	Download File View File

Structure of E.coli FabD complexed with malonate

Oefner, C.

(2006) Acta Crystallogr D Biol Crystallogr 62: 613-618

Released	2006-05-30
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Escherichia coli K-12
Macromolecule	Malonyl CoA-acyl carrier protein transacylase (protein)
Unique Ligands	MLI

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2H89 \| pdb_00002h89	Download File View File

Avian Respiratory Complex II with Malonate Bound

Huang, L.S., Shen, J.T., Wang, A.C., Berry, E.A.

Biochim Biophys Acta 1757: 1073-1083

Released	2006-06-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Gallus gallus
Macromolecule	SUCCINATE DEHYDROGENASE CYTOCHROME B, LARGE SUBUNIT (protein) SUCCINATE DEHYDROGENASE CYTOCHROME B, SMALL SUBUNIT (protein) SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT (protein) Succinate dehydrogenase Ip subunit (protein)
Unique Ligands	BHG, F3S, FAD, FES, HEM, K, MLI, PEE, SF4, UNL

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2HB0 \| pdb_00002hb0	Download File View File

Crystal Structure of CfaE, the Adhesive Subunit of CFA/I Fimbria of Enterotoxigenic Escherichia coli

Li, Y.F., Xia, D., Poole, S., Rasulova, F., Savarino, S.J.

(2007) J Biological Chem 282: 23970-23980

Released	2007-06-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	CFA/I fimbrial subunit E (protein)
Unique Ligands	MLI, PEG

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2I6Q \| pdb_00002i6q	Download File View File

Complement component C2a

Milder, F.J., Raaijmakers, H.C.A., Vandeputte, D.A.A., Schouten, A., Huizinga, E.G., Romijn, R.A., Hemrika, W., Roos, A., Daha, M.R., Gros, P.

(2006) Structure 14: 1587-1597

Released	2006-10-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Complement C2a fragment (protein)
Unique Ligands	MLI, MN, NAG
Unique branched monosaccharides	BMA, FUC, NAG

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2J0P \| pdb_00002j0p	Download File View File

Structure of the haem-chaperone Proteobacteria-protein HemS

Schneider, S., Sharp, K.H., Barker, P.D., Paoli, M.

(2006) J Biological Chem 281: 32606

Released	2006-08-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Yersinia enterocolitica
Macromolecule	HEMIN TRANSPORT PROTEIN HEMS (protein)
Unique Ligands	12P, HEM, MLI, PEG

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2O67 \| pdb_00002o67	Download File View File

Crystal structure of Arabidopsis thaliana PII bound to malonate

Mizuno, Y.M., Berenger, B., Moorhead, G.B.G., Ng, K.K.S.

(2007) Biochemistry 46: 1477-1483

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	PII protein (protein)
Unique Ligands	MLI

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2OG2 \| pdb_00002og2	Download File View File

Crystal structure of chloroplast FtsY from Arabidopsis thaliana

Chartron, J., Chandrasekar, S., Ampornpan, P.J., Shan, S.

(2007) J Mol Biology 375: 425-436

Released	2007-12-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Arabidopsis thaliana
Macromolecule	Putative signal recognition particle receptor (protein)
Unique Ligands	MG, MLI

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2OWC \| pdb_00002owc	Download File View File

Structure of a covalent intermediate in Thermus thermophilus amylomaltase

Barends, T.R.M., Bultema, J.B., Kaper, T., van der Maarel, M.J.E.C., Dijkhuizen, L., Dijkstra, B.W.

(2007) J Biological Chem 282: 17242-17249

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Thermus thermophilus
Macromolecule	4-alpha-glucanotransferase (protein)
Unique Ligands	GOL, MLI
Unique branched monosaccharides	AC1, GLC

1 to 25 of 919 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AT1 | pdb_00001at1

1SC3 | pdb_00001sc3

1SKU | pdb_00001sku

1T9F | pdb_00001t9f

1TUG | pdb_00001tug

1UFY | pdb_00001ufy

1VCY | pdb_00001vcy

2AAL | pdb_00002aal

2B0U | pdb_00002b0u

2B4P | pdb_00002b4p

2B4U | pdb_00002b4u

2BW4 | pdb_00002bw4

2BW5 | pdb_00002bw5

2BWD | pdb_00002bwd

2BWI | pdb_00002bwi

2C95 | pdb_00002c95

2FTW | pdb_00002ftw

2G2Y | pdb_00002g2y

2H89 | pdb_00002h89

2HB0 | pdb_00002hb0

2I6Q | pdb_00002i6q

2J0P | pdb_00002j0p

2O67 | pdb_00002o67

2OG2 | pdb_00002og2

2OWC | pdb_00002owc