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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Zeng, M.S."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	human gammaherpesvirus 4 (7)
	Human herpesvirus 4 strain B95-8 (5)
	Homo sapiens (4)
	Oryctolagus cuniculus (2)
	Human alphaherpesvirus 1 strain KOS (1)
	Human gammaherpesvirus 8 (1)
	Human herpesvirus 8 strain GK18 (1)
	Mus musculus (1)
	Rattus norvegicus (1)
	Xenopus tropicalis (1)

Taxonomy

	Duplodnaviria (15)
	Eukaryota (9)

Experimental Method

	ELECTRON MICROSCOPY (13)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.5 - 3.0 (1)
	3.0 - 3.5 (6)
	3.5 - 4.0 (5)
	4.0 - 4.5 (3)
	> 4.5 (1)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (13)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (3)
	Transferases (1)

Symmetry Type

	Asymmetric (10)
	Cyclic (6)
	Icosahedral (1)

AllSelected

1 to 17 of 17 Structures

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5YD0 \| pdb_00005yd0	Download File View File

Crystal structure of Schlafen 13 (SLFN13) N'-domain

Yang, J.-Y., Gao, S.

(2018) Nat Commun 9: 1165-1165

Released	2018-03-28
Method	X-RAY DIFFRACTION 3.182 Å
Organisms	Rattus norvegicus
Macromolecule	Schlafen 8 (protein)
Unique Ligands	ZN

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6JYJ \| pdb_00006jyj	Download File View File

Crystal structure of FAM46B (TENT5B)

Zhang, H., Hu, J.L., Gao, S.

(2020) Nucleic Acids Res 48: 2733-2748

Released	2020-03-04
Method	X-RAY DIFFRACTION 2.69319882982 Å
Organisms	Xenopus tropicalis
Macromolecule	Terminal nucleotidyltransferase 5B (protein)
Unique Ligands	FLC

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6LQN \| pdb_00006lqn	Download File View File

EBV tegument protein BBRF2

He, H.P., Luo, M., Cao, Y.L., Gao, S.

(2020) Nat Commun 11: 5405-5405

Released	2020-10-07
Method	X-RAY DIFFRACTION 1.60002201523 Å
Organisms	human gammaherpesvirus 4
Macromolecule	Cytoplasmic envelopment protein 1 (protein)
Unique Ligands	NO3, SO4

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6LQO \| pdb_00006lqo	Download File View File

EBV tegument protein BBRF2/BSRF1 complex

He, H.P., Luo, M., Cao, Y.L., Gao, S.

(2020) Nat Commun 11: 5405-5405

Released	2020-10-07
Method	X-RAY DIFFRACTION 3.09112613349 Å
Organisms	human gammaherpesvirus 4
Macromolecule	Cytoplasmic envelopment protein 1 (protein) Tegument protein UL51 homolog (protein)
Unique Ligands	ACT, GOL

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7BQT \| pdb_00007bqt	Download File View File

Epstein-Barr virus, C12 portal dodecamer

Li, Z., Yu, X.

(2020) Cell Res 30: 873-884

Released	2020-09-30
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Human herpesvirus 4 strain B95-8
Macromolecule	Portal protein (protein)

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7BQX \| pdb_00007bqx	Download File View File

Epstein-Barr virus, C5 portal vertex

Li, Z., Yu, X.

(2020) Cell Res 30: 873-884

Released	2020-09-30
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Human herpesvirus 4 strain B95-8
Macromolecule	Unique protein chains: 7

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7BR7 \| pdb_00007br7	Download File View File

Epstein-Barr virus, C1 portal-proximal penton vertex, CATC binding

Li, Z., Yu, X.

(2020) Cell Res 30: 873-884

Released	2020-09-30
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Human herpesvirus 4 strain B95-8
Macromolecule	Unique protein chains: 7

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7BR8 \| pdb_00007br8	Download File View File

Epstein-Barr virus, C5 penton vertex, CATC absent.

Li, Z., Yu, X.

(2020) Cell Res 30: 873-884

Released	2020-09-30
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Human herpesvirus 4 strain B95-8
Macromolecule	Major capsid protein (protein) Small capsomere-interacting protein (protein) Triplex capsid protein 1 (protein) Triplex capsid protein 2 (protein)

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7BSI \| pdb_00007bsi	Download File View File

Epstein-Barr virus, one asymmetric unit structure of the icosahedral tegumented capsid

Li, Z., Yu, X.

(2020) Cell Res 30: 873-884

Released	2020-09-30
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Human herpesvirus 4 strain B95-8
Macromolecule	Major capsid protein (protein) Small capsomere-interacting protein (protein) Triplex capsid protein 1 (protein) Triplex capsid protein 2 (protein)

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7YOY \| pdb_00007yoy	Download File View File

Cryo-EM structure of EBV gHgL-gp42 in complex with mAbs 3E8 and 5E3 (localized refinement)

Liu, L., Sun, H., Jiang, Y., Hong, J., Zheng, Q., Li, S., Chen, Y., Xia, N.

(2023) Cell Rep Med 4: 101296-101296

Released	2024-01-31
Method	ELECTRON MICROSCOPY 3.64 Å
Organisms	Oryctolagus cuniculus human gammaherpesvirus 4
Macromolecule	3E8 heavy chain (protein) 3E8 light chain (protein) 5E3 heavy chain (protein) 5E3 light chain (protein) Soluble gp42 (protein)

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7YP1 \| pdb_00007yp1	Download File View File

Cryo-EM structure of EBV gHgL-gp42 in complex with mAb 10E4 (localized refinement)

Liu, L., Sun, H., Jiang, Y., Hong, J., Zheng, Q., Li, S., Chen, Y., Xia, N.

(2023) Cell Rep Med 4: 101296-101296

Released	2024-01-31
Method	ELECTRON MICROSCOPY 3.54 Å
Organisms	Oryctolagus cuniculus human gammaherpesvirus 4
Macromolecule	10E4 heavy chain (protein) 10E4 light chain (protein) EBV gH (protein) EBV gL (protein)

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7YP2 \| pdb_00007yp2	Download File View File

Cryo-EM structure of EBV gHgL-gp42 in complex with mAb 6H2 (localized refinement)

Liu, L., Sun, H., Jiang, Y., Hong, J., Zheng, Q., Li, S., Chen, Y., Xia, N.

(2023) Cell Rep Med 4: 101296-101296

Released	2024-01-31
Method	ELECTRON MICROSCOPY 3.52 Å
Organisms	Mus musculus human gammaherpesvirus 4
Macromolecule	6H2 heavy chain (protein) 6H2 light chain (protein) Envelope glycoprotein H (protein)

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8KFA \| pdb_00008kfa	Download File View File

Cryo-EM structure of HSV-1 gB with D48 Fab complex

Yang, J., Sun, C., Fang, X., Zeng, M., Liu, Z.

(2023) Hlife

Released	2024-01-03
Method	ELECTRON MICROSCOPY 3.04 Å
Organisms	Homo sapiens Human alphaherpesvirus 1 strain KOS
Macromolecule	D48 heavy chain (protein) D48 light chain (protein) Envelope glycoprotein B (protein)

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8KHR \| pdb_00008khr	Download File View File

Cryo-EM structure of EBV gH/gL-gp42 in complex with fab 2C1

Fang, X.Y., Zhao, G.X., Zeng, M.S., Liu, Z.

(2024) Cell Rep Med 5: 101573-101573

Released	2024-06-19
Method	ELECTRON MICROSCOPY 3.25 Å
Organisms	Homo sapiens human gammaherpesvirus 4
Macromolecule	2C1 heavy chain (protein) 2C1 light chain (protein) Envelope glycoprotein H (protein) Envelope glycoprotein L (protein) Soluble gp42 (protein)

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8Y48 \| pdb_00008y48	Download File View File

Structure of KSHV glycoprotein B

Fang, X.Y., Sun, C., Xie, C., Liu, Z., Zeng, M.S.

To be published

Released	2025-02-19
Method	ELECTRON MICROSCOPY 3.26 Å
Organisms	Human herpesvirus 8 strain GK18
Macromolecule	Envelope glycoprotein B (protein)

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8ZNI \| pdb_00008zni	Download File View File

Structure of Epstein-Barr virus major glycoprotein gp350 in complex with the receptor CR2

Fang, X.Y., Sun, C., Liu, Z., Zeng, M.S.

(2025) Cell Rep 44: 115168-115168

Released	2025-01-15
Method	ELECTRON MICROSCOPY 3.29 Å
Organisms	Homo sapiens human gammaherpesvirus 4
Macromolecule	BLLF1 (protein) Complement receptor type 2 (protein)
Unique Ligands	NAG

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9LLD \| pdb_00009lld	Download File View File

Post-fusion ectodomain of KSHV gB in complex with 2C4 Fab

Fang, X.Y., Sun, C., Xie, C., Zeng, M.S., Liu, Z.

To be published

Released	2025-03-05
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Human gammaherpesvirus 8
Macromolecule	2C4 Fab H chain (protein) 2C4 Fab L chain (protein) Core gene UL27 family protein (protein)

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5YD0 | pdb_00005yd0

Crystal structure of Schlafen 13 (SLFN13) N'-domain

6JYJ | pdb_00006jyj

Crystal structure of FAM46B (TENT5B)

6LQN | pdb_00006lqn

EBV tegument protein BBRF2

6LQO | pdb_00006lqo

EBV tegument protein BBRF2/BSRF1 complex

7BQT | pdb_00007bqt

Epstein-Barr virus, C12 portal dodecamer

7BQX | pdb_00007bqx

Epstein-Barr virus, C5 portal vertex

7BR7 | pdb_00007br7

Epstein-Barr virus, C1 portal-proximal penton vertex, CATC binding

7BR8 | pdb_00007br8

Epstein-Barr virus, C5 penton vertex, CATC absent.

7BSI | pdb_00007bsi

Epstein-Barr virus, one asymmetric unit structure of the icosahedral tegumented capsid

7YOY | pdb_00007yoy

Cryo-EM structure of EBV gHgL-gp42 in complex with mAbs 3E8 and 5E3 (localized refinement)

7YP1 | pdb_00007yp1

Cryo-EM structure of EBV gHgL-gp42 in complex with mAb 10E4 (localized refinement)

7YP2 | pdb_00007yp2

Cryo-EM structure of EBV gHgL-gp42 in complex with mAb 6H2 (localized refinement)

8KFA | pdb_00008kfa

Cryo-EM structure of HSV-1 gB with D48 Fab complex

8KHR | pdb_00008khr

Cryo-EM structure of EBV gH/gL-gp42 in complex with fab 2C1

8Y48 | pdb_00008y48

Structure of KSHV glycoprotein B

8ZNI | pdb_00008zni

Structure of Epstein-Barr virus major glycoprotein gp350 in complex with the receptor CR2

9LLD | pdb_00009lld

Post-fusion ectodomain of KSHV gB in complex with 2C4 Fab

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

5YD0 | pdb_00005yd0

6JYJ | pdb_00006jyj

6LQN | pdb_00006lqn

6LQO | pdb_00006lqo

7BQT | pdb_00007bqt

7BQX | pdb_00007bqx

7BR7 | pdb_00007br7

7BR8 | pdb_00007br8

7BSI | pdb_00007bsi

7YOY | pdb_00007yoy

7YP1 | pdb_00007yp1

7YP2 | pdb_00007yp2

8KFA | pdb_00008kfa

8KHR | pdb_00008khr

8Y48 | pdb_00008y48

8ZNI | pdb_00008zni

9LLD | pdb_00009lld