Download MendeleyPost-fusion ectodomain of KSHV gB in complex with 2C4 Fab
Fang, X.Y., Sun, C., Xie, C., Zeng, M.S., Liu, Z.To be published.
9LLD | pdb_00009lld
Post-fusion ectodomain of KSHV gB in complex with 2C4 Fab
- PDB DOI: https://doi.org/10.2210/pdb9LLD/pdb
- EM Map EMD-63198: EMDB EMDataResource
- Classification: VIRAL PROTEIN/IMMUNE SYSTEM
- Organism(s): Human gammaherpesvirus 8, Homo sapiens
- Expression System: Human gammaherpesvirus 8, Homo sapiens
- Mutation(s): No
- Deposited: 2025-01-17 Released: 2025-03-05
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.60 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Core gene UL27 family protein | A [auth C], D [auth A], G [auth B] | 661 | Human gammaherpesvirus 8 | Mutation(s): 0 Gene Names: ORF8 |  |
UniProt | |||||
Find proteins for F5HB81 (Human herpesvirus 8 type P (isolate GK18)) Explore F5HB81 Go to UniProtKB: F5HB81 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F5HB81 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2C4 Fab H chain | B [auth H], E [auth D], H [auth E] | 252 | Homo sapiens | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2C4 Fab L chain | C [auth L], F, I [auth G] | 235 | Homo sapiens | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.60 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | 1.20.1_4487 |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-03-05 Deposition Author(s): Fang, X.Y., Sun, C., Xie, C., Zeng, M.S., Liu, Z.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | 82030046 |
Revision History (Full details and data files)
- Version 1.0: 2025-03-05
Type: Initial release
