8ZNI | pdb_00008zni

Structure of Epstein-Barr virus major glycoprotein gp350 in complex with the receptor CR2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.29 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of Epstein-Barr virus gp350 receptor recognition and neutralization.

Sun, C.Fang, X.Y.Bu, G.L.Zhong, L.Y.Xie, C.Zhao, G.X.Sui, S.F.Liu, Z.Zeng, M.S.

(2025) Cell Rep 44: 115168-115168

  • DOI: https://doi.org/10.1016/j.celrep.2024.115168
  • Primary Citation of Related Structures:  
    8ZNI

  • PubMed Abstract: 

    Epstein-Barr virus (EBV) is an oncogenic virus associated with multiple lymphoid malignancies and autoimmune diseases. During infection in B cells, EBV uses its major glycoprotein gp350 to recognize the host receptor CR2, initiating viral attachment, a process that has lacked direct structural evidence for decades. In this study, we resolved the structure of the gp350-CR2 complex, elucidated their key interactions, and determined the site-specific N-glycosylation map of gp350. Our findings reveal that CR2 primarily binds to gp350 through an electrostatically complementary and glycan-free interface and that the diversity of key residues in CR2 across different species influences EBV host selectivity mediated by gp350. With the confirmed binding, we constructed a CR2-Fc antibody analog that targets the vulnerable site of gp350, demonstrating a potent neutralization effect against EBV infection in B cells. Our work provides essential structural insights into the mechanism of EBV infection and host tropism, suggesting a potential antiviral agent.


  • Organizational Affiliation

    State Key Laboratory of Oncology in South China, Guangdong Provincial Clinical Research Center for Cancer, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China. Electronic address: suncong@sysucc.org.cn.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Complement receptor type 2977Homo sapiensMutation(s): 0 
Gene Names: CR2C3DR
UniProt & NIH Common Fund Data Resources
Find proteins for P20023 (Homo sapiens)
Explore P20023 
Go to UniProtKB:  P20023
PHAROS:  P20023
GTEx:  ENSG00000117322 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP20023
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
BLLF1864human gammaherpesvirus 4Mutation(s): 0 
Gene Names: BLLF1BLLF1bEBVaGC1_023HHV4_BLLF2
UniProt
Find proteins for Q3KST4 (Epstein-Barr virus (strain GD1))
Explore Q3KST4 
Go to UniProtKB:  Q3KST4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ3KST4
Glycosylation
Glycosylation Sites: 1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.29 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China82030046

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-15
    Type: Initial release
  • Version 1.1: 2025-01-22
    Changes: Data collection, Database references