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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yang, H."

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Search Summary

This query matches 956 Structures.

Refinements

Structure Determination Methodology

experimental (956)

Scientific Name of Source Organism

	Homo sapiens (445)
	Severe acute respiratory syndrome coronavirus 2 (101)
	synthetic construct (59)
	Mus musculus (40)
	Mycobacterium tuberculosis H37Rv (39)
	Escherichia coli (30)
	Mycolicibacterium smegmatis MC2 155 (30)
	Coxsackievirus B1 (26)
	Macaca mulatta (15)
	Tequatrovirus T4 (15)

More...

Taxonomy

	Eukaryota (569)
	Riboviria (282)
	Bacteria (186)
	other sequences (59)
	Archaea (26)
	Duplodnaviria (22)
	Varidnaviria (10)
	Eukaryota (eukaryotes) (4)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

	X-RAY DIFFRACTION (685)
	ELECTRON MICROSCOPY (254)
	SOLUTION NMR (17)

Polymer Entity Type

	Protein (956)
	DNA (59)
	RNA (38)

Refinement Resolution (Å)

	1.0 - 1.5 (19)
	1.5 - 2.0 (176)
	2.0 - 2.5 (261)
	2.5 - 3.0 (199)
	3.0 - 3.5 (164)
	3.5 - 4.0 (84)
	4.0 - 4.5 (17)
	> 4.5 (19)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (30)
	2005 - 2009 (48)
	2010 - 2014 (129)
	2015 - 2019 (238)
	2020 - 2024 (489)
	2025 - 2029 (20)

Enzyme Classification Name

	Hydrolases (316)
	Transferases (173)
	Oxidoreductases (29)
	Lyases (29)
	Translocases (9)
	Ligases (7)
	Isomerases (4)

Membrane Protein Annotation

	PDBTM (90)
	MemProtMD (57)
	mpstruc (52)
	OPM (47)

Symmetry Type

	Asymmetric (589)
	Cyclic (318)
	Icosahedral (35)
	Dihedral (29)
	Tetrahedral (3)
	Helical (4)
	Octahedral (1)

SCOP Classification

	All beta proteins (146)
	Coiled coil proteins (45)
	Artifacts (67)
	Alpha and beta proteins (a/b) (44)
	Alpha and beta proteins (a+b) (50)
	All alpha proteins (30)
	Membrane and cell surface proteins and peptides (20)
	Small proteins (5)
	Multi-domain proteins (alpha and beta) (10)
	Peptides (1)

AllSelected

1 to 25 of 956 Structures

Page 1 of 39

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1D5R \| pdb_00001d5r	Download File View File

Crystal Structure of the PTEN Tumor Suppressor

Lee, J.O., Yang, H., Georgescu, M.-M., Di Cristofano, A., Pavletich, N.P.

(1999) Cell 99: 323-334

Released	1999-11-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PHOSPHOINOSITIDE PHOSPHATASE PTEN (protein)
Unique Ligands	TLA

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1DK4 \| pdb_00001dk4	Download File View File

CRYSTAL STRUCTURE OF MJ0109 GENE PRODUCT INOSITOL MONOPHOSPHATASE

Stec, B., Yang, H., Johnson, K.A., Chen, L., Roberts, M.F.

(2000) Nat Struct Biol 7: 1046-1050

Released	2000-11-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	INOSITOL MONOPHOSPHATASE (protein)
Unique Ligands	PO4, ZN

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1G0H \| pdb_00001g0h	Download File View File

CRYSTAL STRUCTURE OF MJ0109 GENE PRODUCT INOSITOL MONOPHOSPHATASE-FRUCTOSE 1,6 BISPHOSPHATASE

Johnson, K.A., Chen, L., Yang, H., Roberts, M.F., Stec, B.

(2001) Biochemistry 40: 618-630

Released	2001-03-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	INOSITOL MONOPHOSPHATASE (protein)
Unique Ligands	CA, IPD

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1G0I \| pdb_00001g0i	Download File View File

CRYSTAL STRUCTURE OF MJ0109 GENE PRODUCT INOSITOL MONOPHOSPHATASE-FRUCTOSE 1,6 BISPHOSPHATASE

Johnson, K.A., Chen, L., Yang, H., Roberts, M.F., Stec, B.

(2001) Biochemistry 40: 618-630

Released	2001-03-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	INOSITOL MONOPHOSPHATASE (protein)
Unique Ligands	INS, MN, PO4

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1IYJ \| pdb_00001iyj	Download File View File

STRUCTURE OF A BRCA2-DSS1 COMPLEX

Pavletich, N.P., Jeffrey, P.D., Yang, H.J.

(2002) Science 297: 1837-1848

Released	2002-10-02
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Deleted in split hand/split foot protein 1 (protein) breast cancer susceptibility (protein)

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1L2Z \| pdb_00001l2z	Download File View File

CD2BP2-GYF domain in complex with proline-rich CD2 tail segment peptide

Freund, C., Kuhne, R., Yang, H., Park, S., Reinherz, E.L., Wagner, G.

(2002) EMBO J 21: 5985-5995

Released	2002-11-20
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CD2 ANTIGEN (CYTOPLASMIC TAIL)-BINDING PROTEIN 2 (protein) T-CELL SURFACE ANTIGEN CD2 (protein)

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1LB2 \| pdb_00001lb2	Download File View File

Structure of the E. coli alpha C-terminal domain of RNA polymerase in complex with CAP and DNA

Benoff, B., Yang, H., Lawson, C.L., Parkinson, G., Liu, J., Blatter, E., Ebright, Y.W., Berman, H.M., Ebright, R.H.

(2002) Science 297: 1562-1566

Released	2002-09-06
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (protein) DNA-directed RNA polymerase alpha chain (protein) 5'-D(CPTPAPGPAPTPCPAPCPAPTPTPTPTPAPGPGPAPAPAPAPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPTPTPTPTPCPCPTPAPAPAPAPTPGPTPGPAPT)-3' (nucleic acid)
Unique Ligands	CMP

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1LBV \| pdb_00001lbv	Download File View File

Crystal Structure of apo-form (P21) of dual activity FBPase/IMPase (AF2372) from Archaeoglobus fulgidus

Stieglitz, K.A., Johnson, K.A., Yang, H., Roberts, M.F., Seaton, B.A., Head, J.F., Stec, B.

(2002) J Biological Chem 277: 22863-22874

Released	2002-05-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	fructose 1,6-bisphosphatase/inositol monophosphatase (protein)

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1LBW \| pdb_00001lbw	Download File View File

Crystal Structure of apo-form (P32) of dual activity FBPase/IMPase (AF2372) from Archaeoglobus fulgidus

Stieglitz, K.A., Johnson, K.A., Yang, H., Roberts, M.F., Seaton, B.A., Head, J.F., Stec, B.

(2002) J Biological Chem 277: 22863-22874

Released	2002-05-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	fructose 1,6-bisphosphatase/inositol monophosphatase (protein)

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1LBX \| pdb_00001lbx	Download File View File

Crystal Structure of a ternary complex of dual activity FBPase/IMPase (AF2372) from Archaeoglobus fulgidus with Calcium ions and D-myo-Inositol-1-Phosphate

Stieglitz, K.A., Johnson, K.A., Yang, H., Roberts, M.F., Seaton, B.A., Head, J.F., Stec, B.

(2002) J Biological Chem 277: 22863-22874

Released	2002-05-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	fructose 1,6-bisphosphatase/inositol monophosphatase (protein)
Unique Ligands	CA, IPD

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1LBY \| pdb_00001lby	Download File View File

Crystal Structure of a complex (P32 crystal form) of dual activity FBPase/IMPase (AF2372) from Archaeoglobus fulgidus with 3 Manganese ions, Fructose-6-Phosphate, and Phosphate ion

Stieglitz, K.A., Johnson, K.A., Yang, H., Roberts, M.F., Seaton, B.A., Head, J.F., Stec, B.

(2002) J Biological Chem 277: 22863-22874

Released	2002-05-22
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	fructose 1,6-bisphosphatase/inositol monophosphatase (protein)
Unique Ligands	F6P, MN, PO4

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1LBZ \| pdb_00001lbz	Download File View File

Crystal Structure of a complex (P32 crystal form) of dual activity FBPase/IMPase (AF2372) from Archaeoglobus fulgidus with 3 Calcium ions and Fructose-1,6 bisphosphate

Stieglitz, K.A., Johnson, K.A., Yang, H., Roberts, M.F., Seaton, B.A., Head, J.F., Stec, B.

(2002) J Biological Chem 277: 22863-22874

Released	2002-05-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	fructose 1,6-bisphosphatase/inositol monophosphatase (protein)
Unique Ligands	CA, FBP

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1LM8 \| pdb_00001lm8	Download File View File

Structure of a HIF-1a-pVHL-ElonginB-ElonginC Complex

Min, J.-H., Yang, H., Ivan, M., Gertler, F., Kaelin JR., W.G., Pavletich, N.P.

(2002) Science 296: 1886-1889

Released	2002-06-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	ELONGIN B (protein) ELONGIN C (protein) Hypoxia-inducible factor 1 alpha (protein) Von Hippel-Lindau disease tumor suppressor (protein)

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1MHD \| pdb_00001mhd	Download File View File

CRYSTAL STRUCTURE OF A SMAD MH1 DOMAIN BOUND TO DNA

Shi, Y.

(1998) Cell 94: 585-594

Released	1999-08-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	SMAD3 (protein) DNA (nucleic acid)

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1MIU \| pdb_00001miu	Download File View File

Structure of a BRCA2-DSS1 complex

Yang, H., Jeffrey, P.D., Miller, J., Kinnucan, E., Sun, Y., Thoma, N.H., Zheng, N., Chen, P.L., Lee, W.H., Pavletich, N.P.

(2002) Science 297: 1837-1848

Released	2002-09-25
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Breast Cancer type 2 susceptibility protein (protein) Deleted in split hand/split foot protein 1 (protein)
Unique Ligands	HG

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1MJE \| pdb_00001mje	Download File View File

STRUCTURE OF A BRCA2-DSS1-SSDNA COMPLEX

Yang, H., Jeffrey, P.D., Miller, J., Kinnucan, E., Sun, Y., Thoma, N.H., Zheng, N., Chen, P.L., Lee, W.H., Pavletich, N.P.

(2002) Science 297: 1837-1848

Released	2002-09-27
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Deleted in split hand/split foot protein 1 (protein) breast cancer 2 (protein) 5'-D(PTPTPTPTPTPT)-3' (nucleic acid)

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1NH9 \| pdb_00001nh9	Download File View File

Crystal Structure of a DNA Binding Protein Mja10b from the hyperthermophile Methanococcus jannaschii

Wang, G., Bartlam, M., Guo, R., Yang, H., Xue, H., Liu, Y., Huang, L., Rao, Z.

(2003) Protein Sci 12: 2815-2822

Released	2003-12-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	DNA-binding protein Alba (protein)

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1P2A \| pdb_00001p2a	Download File View File

The structure of cyclin dependent kinase 2 (CKD2) with a trisubstituted naphthostyril inhibitor

Liu, J.-J., Dermatakis, A., Lukacs, C.M., Konzelmann, F., Chen, Y., Kammlott, U., Depinto, W., Yang, H., Yin, X., Chen, Y., Schutt, A., Simcox, M.E., Luk, K.-C.

(2003) Bioorg Med Chem 13: 2465-2468

Released	2003-07-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Cell division protein kinase 2 (protein)
Unique Ligands	5BN

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1R8T \| pdb_00001r8t	Download File View File

Solution structures of high affinity miniprotein ligands to Streptavidin

Luo, J., Mukherjee, M., Fan, X., Yang, H., Liu, D., Khan, R., White, M., Fox, R.O.

To be published

Released	2005-02-15
Method	SOLUTION NMR
Macromolecule	MP1 (protein)

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1RYQ \| pdb_00001ryq	Download File View File

Putative DNA-directed RNA polymerase, subunit e'' from Pyrococcus Furiosus Pfu-263306-001

Liu, Z.-J., Chen, L., Tempel, W., Shah, A., Arendall III, W.B., Rose, J.P., Brereton, P.S., Izumi, M., Jenney Jr., F.E., Lee, H.S., Poole II, F.L., Shah, C., Sugar, F.J., Adams, M.W.W., Richardson, D.C., Richardson, J.S., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

(2005) Acta Crystallogr D Biol Crystallogr 61: 520-527

Released	2004-08-10
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA-directed RNA polymerase, subunit e'' (protein)
Unique Ligands	ZN

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1U1I \| pdb_00001u1i	Download File View File

Myo-inositol phosphate synthase mIPS from A. fulgidus

Stieglitz, K.A., Yang, H., Roberts, M.F., Stec, B.

(2005) Biochemistry 44: 213-224

Released	2004-08-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	myo-inositol-1-phosphate synthase (protein)
Unique Ligands	K, NAD, PO4

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1UJ1 \| pdb_00001uj1	Download File View File

Crystal structure of SARS Coronavirus Main Proteinase (3CLpro)

Yang, H., Yang, M., Liu, Y., Bartlam, M., Ding, Y., Lou, Z., Sun, L., Zhou, Z., Ye, S., Anand, K., Pang, H., Gao, G.F., Hilgenfeld, R., Rao, Z.

(2003) Proc Natl Acad Sci U S A 100: 13190-13195

Released	2003-11-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)

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1UK2 \| pdb_00001uk2	Download File View File

Crystal structure of SARS Coronavirus Main Proteinase (3CLpro) At pH8.0

Yang, H., Yang, M., Liu, Y., Bartlam, M., Ding, Y., Lou, Z., Sun, L., Zhou, Z., Ye, S., Anand, K., Pang, H., Gao, G.F., Hilgenfeld, R., Rao, Z.

(2003) Proc Natl Acad Sci U S A 100: 13190-13195

Released	2003-11-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-LIKE PROTEINASE (protein)

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1UK3 \| pdb_00001uk3	Download File View File

Crystal structure of SARS Coronavirus Main Proteinase (3CLpro) At pH7.6

Yang, H., Yang, M., Liu, Y., Bartlam, M., Ding, Y., Lou, Z., Sun, L., Zhou, Z., Ye, S., Anand, K., Pang, H., Gao, G.F., Hilgenfeld, R., Rao, Z.

(2003) Proc Natl Acad Sci U S A 100: 13190-13195

Released	2003-11-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)

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1UK4 \| pdb_00001uk4	Download File View File

Crystal structure of SARS Coronavirus Main Proteinase (3CLpro) Complexed With An Inhibitor

Yang, H., Yang, M., Liu, Y., Bartlam, M., Ding, Y., Lou, Z., Sun, L., Zhou, Z., Ye, S., Anand, K., Pang, H., Gao, G.F., Hilgenfeld, R., Rao, Z.

(2003) Proc Natl Acad Sci U S A 100: 13190-13195

Released	2003-11-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Severe acute respiratory syndrome-related coronavirus synthetic construct
Macromolecule	3C-like proteinase nsp5 (protein) 5-mer peptide of inhibitor (protein)

1 to 25 of 956 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1D5R | pdb_00001d5r

1DK4 | pdb_00001dk4

1G0H | pdb_00001g0h

1G0I | pdb_00001g0i

1IYJ | pdb_00001iyj

1L2Z | pdb_00001l2z

1LB2 | pdb_00001lb2

1LBV | pdb_00001lbv

1LBW | pdb_00001lbw

1LBX | pdb_00001lbx

1LBY | pdb_00001lby

1LBZ | pdb_00001lbz

1LM8 | pdb_00001lm8

1MHD | pdb_00001mhd

1MIU | pdb_00001miu

1MJE | pdb_00001mje

1NH9 | pdb_00001nh9

1P2A | pdb_00001p2a

1R8T | pdb_00001r8t

1RYQ | pdb_00001ryq

1U1I | pdb_00001u1i

1UJ1 | pdb_00001uj1

1UK2 | pdb_00001uk2

1UK3 | pdb_00001uk3

1UK4 | pdb_00001uk4