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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Xie, W."

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Search Summary

This query matches 199 Structures.

Refinements

Structure Determination Methodology

experimental (199)

Scientific Name of Source Organism

	Homo sapiens (62)
	Arabidopsis thaliana (26)
	synthetic construct (13)
	Mus musculus (9)
	Mycolicibacterium smegmatis MC2 155 (8)
	Pyrococcus abyssi GE5 (7)
	Gallus gallus (6)
	Mycobacterium tuberculosis H37Rv (5)
	Saccharomyces cerevisiae S288C (5)
	Zika virus (5)

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Taxonomy

	Eukaryota (122)
	Bacteria (57)
	other sequences (13)
	Riboviria (11)
	Archaea (7)
	unclassified sequences (3)
	Riboviria (RNA viruses and viroids) (2)

Experimental Method

	X-RAY DIFFRACTION (190)
	ELECTRON MICROSCOPY (9)

Polymer Entity Type

	Protein (199)
	RNA (19)
	DNA (5)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (42)
	2.0 - 2.5 (82)
	2.5 - 3.0 (43)
	3.0 - 3.5 (21)
	3.5 - 4.0 (6)
	4.0 - 4.5 (2)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (13)
	2010 - 2014 (26)
	2015 - 2019 (84)
	2020 - 2024 (70)
	2025 - 2029 (4)

Enzyme Classification Name

	Transferases (64)
	Hydrolases (58)
	Oxidoreductases (8)
	Ligases (11)
	Lyases (3)

Membrane Protein Annotation

	PDBTM (14)
	MemProtMD (13)
	mpstruc (10)
	OPM (2)

Symmetry Type

	Asymmetric (119)
	Cyclic (81)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (22)
	Artifacts (27)
	All beta proteins (13)
	Alpha and beta proteins (a+b) (14)
	All alpha proteins (4)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 199 Structures

Page 1 of 8

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1Q2R \| pdb_00001q2r	Download File View File

Chemical trapping and crystal structure of a catalytic tRNA guanine transglycosylase covalent intermediate

Xie, W., Liu, X., Huang, R.H.

(2003) Nat Struct Biol 10: 781-788

Released	2003-09-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Zymomonas mobilis synthetic construct
Macromolecule	Queuine tRNA-ribosyltransferase (protein) RNA (5'-R(APGPCPAPCPGPGPCPUP(N)PUPAPAPAPCPCPGPUPGPC)-3') (nucleic acid)
Unique Ligands	9DG, ZN

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1Q2S \| pdb_00001q2s	Download File View File

Chemical trapping and crystal structure of a catalytic tRNA guanine transglycosylase covalent intermediate

Xie, W., Liu, X., Huang, R.H.

(2003) Nat Struct Biol 10: 781-788

Released	2003-09-09
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Zymomonas mobilis synthetic construct
Macromolecule	Queuine tRNA-ribosyltransferase (protein) 5'-R(APGPCPAPCPGPGPCPUP(PQ1)PUPAPAPAPCPCPGPUPGPC)-3' (nucleic acid) RNA (5'-R(APGPCPAPCPGPGPCPUP(N)PUPAPAPAPCPCPGPUPGPC)-3') (nucleic acid)
Unique Ligands	9DG, ZN

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1WOF \| pdb_00001wof	Download File View File

Crystal Structure Of SARS-CoV Mpro in Complex with an Inhibitor N1

Yang, H., Bartlam, M., Xue, X., Yang, K., Liang, W., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-08-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	I12

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1YN6 \| pdb_00001yn6	Download File View File

Crystal structure of a mouse MHC class I protein, H2-Db, in complex with a peptide from the influenza A acid polymerase

Turner, S.J., Kedzierska, K., Komodromou, H., La Gruta, N.L., Dunstone, M.A., Webb, A.I., Webby, R., Walden, H., Xie, W., McCluskey, J., Purcell, A.W., Rossjohn, J., Doherty, P.C.

(2005) Nat Immunol 6: 382-389

Released	2005-06-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Influenza A virus (strain A/Swine/Iowa/15/1930 H1N1) Mus musculus
Macromolecule	10-mer peptide from RNA-directed RNA polymerase subunit P2 (protein) Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein)

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1YN7 \| pdb_00001yn7	Download File View File

Crystal structure of a mouse MHC class I protein, H2-Db, in complex with a mutated peptide (R7A) of the influenza A acid polymerase

Turner, S.J., Kedzierska, K., Komodromou, H., La Gruta, N.L., Dunstone, M.A., Webb, A.I., Webby, R., Walden, H., Xie, W., McCluskey, J., Purcell, A.W., Rossjohn, J., Doherty, P.C.

(2005) Nat Immunol 6: 382-389

Released	2005-06-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Influenza A virus (strain A/Swine/Iowa/15/1930 H1N1) Mus musculus
Macromolecule	10-mer peptide from RNA-directed RNA polymerase subunit P2 (protein) Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein)

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2AMD \| pdb_00002amd	Download File View File

Crystal Structure Of SARS_CoV Mpro in Complex with an Inhibitor N9

Yang, H., Xue, X., Yang, K., Zhao, Q., Bartlam, M., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	9IN

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2AMP \| pdb_00002amp	Download File View File

Crystal Structure Of Porcine Transmissible Gastroenteritis Virus Mpro in Complex with an Inhibitor N1

Yang, H., Xue, X., Yang, K., Zhao, Q., Bartlam, M., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Transmissible gastroenteritis virus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	I12

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2AMQ \| pdb_00002amq	Download File View File

Crystal Structure Of SARS_CoV Mpro in Complex with an Inhibitor N3

Yang, H., Xue, X., Yang, K., Zhao, Q., Bartlam, M., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Severe acute respiratory syndrome-related coronavirus synthetic construct
Macromolecule	3C-like proteinase (protein) N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE (protein)

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2D2D \| pdb_00002d2d	Download File View File

Crystal Structure Of SARS-CoV Mpro in Complex with an Inhibitor I2

Yang, H., Bartlam, M., Xue, X., Yang, K., Liang, W., Ding, Y., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ENB

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2PME \| pdb_00002pme	Download File View File

The Apo crystal Structure of the glycyl-tRNA synthetase

Xie, W.

(2007) Proc Natl Acad Sci U S A 104: 9976-9981

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Glycyl-tRNA synthetase (protein)

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2PMF \| pdb_00002pmf	Download File View File

The crystal structure of a human glycyl-tRNA synthetase mutant

Xie, W.

(2007) Proc Natl Acad Sci U S A 104: 9976-9981

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	Glycyl-tRNA synthetase (protein)
Unique Ligands	CL, GOL

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3CRM \| pdb_00003crm	Download File View File

Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel

Huang, R.H., Xie, W., Zhou, C.

(2007) J Mol Biology 367: 872-881

Released	2008-04-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	tRNA delta(2)-isopentenylpyrophosphate transferase (protein)

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3CRQ \| pdb_00003crq	Download File View File

Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel

Huang, R.H., Xie, W., Zhou, C.

(2007) J Mol Biology 367: 872-881

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	tRNA delta(2)-isopentenylpyrophosphate transferase (protein)
Unique Ligands	DPO, MG

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3CRR \| pdb_00003crr	Download File View File

Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel

Huang, R.H., Xie, W., Zhou, C.

(2007) J Mol Biology 367: 872-881

Released	2008-04-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	tRNA delta(2)-isopentenylpyrophosphate transferase (protein)
Unique Ligands	CL, DPO, MG, TRS

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3GGR \| pdb_00003ggr	Download File View File

Crystal Structure of the Human Rad9-Hus1-Rad1 complex

Xu, M., Bai, L., Hang, H.Y., Jiang, T.

(2009) J Biological Chem 284: 20457-20461

Released	2009-06-16
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Cell cycle checkpoint control protein RAD9A (protein) Cell cycle checkpoint protein RAD1 (protein) Checkpoint protein HUS1 (protein)

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3JZ3 \| pdb_00003jz3	Download File View File

Structure of the cytoplasmic segment of histidine kinase QseC

Xie, W., Kwiatkowski, W., Choe, S., Center for Structures of Membrane Proteins (CSMP)

(2010) Protein Pept Lett 17: 1383-1391

Released	2010-07-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Sensor protein qseC (protein)
Unique Ligands	SO4

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3KYT \| pdb_00003kyt	Download File View File

Crystal structure of orphan nuclear receptor RORgamma in complex with natural ligand

Martynowski, D., Li, Y.

(2010) Mol Endocrinol 24: 923-929

Released	2010-03-16
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor ROR-gamma (protein) Nuclear receptor coactivator 2 (protein)
Unique Ligands	HC2

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3L0J \| pdb_00003l0j	Download File View File

Crystal structure of orphan nuclear receptor RORgamma in complex with natural ligand

Martynowski, D., Li, Y.

(2010) Mol Endocrinol 24: 923-929

Released	2010-03-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor ROR-gamma (protein) Nuclear receptor coactivator 2 (protein)
Unique Ligands	HC9

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3L0L \| pdb_00003l0l	Download File View File

Crystal structure of orphan nuclear receptor RORgamma in complex with natural ligand

Martynowski, D., Li, Y.

(2010) Mol Endocrinol 24: 923-929

Released	2010-03-16
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor ROR-gamma (protein) SCR2-2 (protein)
Unique Ligands	HC3