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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Su, Z."

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Search Summary

This query matches 171 Structures.

Refinements

Structure Determination Methodology

experimental (171)

Scientific Name of Source Organism

	Homo sapiens (27)
	Severe acute respiratory syndrome coronavirus 2 (21)
	Pseudomonas protegens Pf-5 (18)
	Tetrahymena thermophila (15)
	Sulfolobus monocaudavirus SMV1 (12)
	synthetic construct (12)
	Oncomelania hupensis (5)
	Comamonas testosteroni KF-1 (4)
	Desulfonema ishimotonii (4)
	Escherichia coli (4)

More...

Taxonomy

	Bacteria (61)
	Eukaryota (61)
	Riboviria (26)
	Viruses incertae sedis (13)
	other sequences (12)
	Adnaviria (3)
	Archaea (3)
	unclassified bacterial viruses (1)

Experimental Method

	ELECTRON MICROSCOPY (106)
	X-RAY DIFFRACTION (65)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (126)
	RNA (53)
	DNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (21)
	1.5 - 2.0 (14)
	2.0 - 2.5 (26)
	2.5 - 3.0 (23)
	3.0 - 3.5 (23)
	3.5 - 4.0 (25)
	4.0 - 4.5 (19)
	> 4.5 (20)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (16)
	2020 - 2024 (139)
	2025 - 2029 (14)

Enzyme Classification Name

	Hydrolases (28)
	Isomerases (5)
	Oxidoreductases (5)
	Transferases (7)
	Lyases (3)
	Translocases (1)

Membrane Protein Annotation

	PDBTM (14)
	MemProtMD (10)
	mpstruc (13)
	OPM (11)

Symmetry Type

	Cyclic (54)
	Asymmetric (41)
	Helical (29)
	Dihedral (1)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	All beta proteins (8)
	All alpha proteins (2)
	Artifacts (4)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 171 Structures

Page 1 of 7

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4HBN \| pdb_00004hbn	Download File View File

Crystal structure of the human HCN4 channel C-terminus carrying the S672R mutation

Xu, X., Marni, F., Wu, X., Su, Z., Musayev, F., Shrestha, S., Xie, C., Gao, W., Liu, Q., Zhou, L.

(2012) Structure 20: 2116-2123

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 (protein)
Unique Ligands	CMP, PO4

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4IT7 \| pdb_00004it7	Download File View File

Crystal structure of Al-CPI

Mei, G.Q., Liu, S.L., Sun, M.Z., Liu, J.

(2014) PLoS One 9: e96069-e96069

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Ascaris lumbricoides
Macromolecule	CPI (protein)

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4RL1 \| pdb_00004rl1	Download File View File

Structural and functional analysis of a loading acyltransferase from the avermectin modular polyketide synthase

Wang, F., Wang, Y., Zheng, J.

(2015) ACS Chem Biol 10: 1017-1025

Released	2015-01-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces avermitilis MA-4680 = NBRC 14893
Macromolecule	Type I polyketide synthase AVES 1 (protein)

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4UC4 \| pdb_00004uc4	Download File View File

Crystal structure of hybrid tudor domain of human lysine demethylase KDM4B

Wang, F., Su, Z., Denu, J.M., Phillips Jr., G.N.

(2016) Nat Commun 7: 13387-13387

Released	2016-03-16
Method	X-RAY DIFFRACTION 2.5612 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4B (protein)

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4YPI \| pdb_00004ypi	Download File View File

Structure of Ebola virus nucleoprotein N-terminal fragment bound to a peptide derived from Ebola VP35

Leung, D.W., Borek, D.M., Binning, J.M., Otwinowski, Z., Amarasinghe, G.K., Center for Structural Genomics of Infectious Diseases (CSGID)

(2015) Cell Rep 11: 376-389

Released	2015-04-08
Method	X-RAY DIFFRACTION 3.71 Å
Organisms	Ebola virus - Mayinga, Zaire, 1976
Macromolecule	Nucleoprotein (protein) Polymerase cofactor VP35 (protein)

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5D6W \| pdb_00005d6w	Download File View File

Crystal structure of double tudor domain of human lysine demethylase KDM4A

Wang, F., Su, Z., Denu, J.M., Phillips Jr., G.N., Enzyme Discovery for Natural Product Biosynthesis (NatPro)

(2016) Nat Commun 7: 13387-13387

Released	2015-11-25
Method	X-RAY DIFFRACTION 1.992 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4A (protein)
Unique Ligands	SRT

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5D6X \| pdb_00005d6x	Download File View File

Crystal structure of double tudor domain of human lysine demethylase KDM4A

Wang, F., Su, Z., Denu, J.M., Phillips Jr., G.N., Enzyme Discovery for Natural Product Biosynthesis (NatPro)

(2016) Nat Commun 7: 13387-13387

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.153 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4A (protein)
Unique Ligands	SO4

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5D6Y \| pdb_00005d6y	Download File View File

Crystal structure of double tudor domain of human lysine demethylase KDM4A complexed with histone H3K23me3

Wang, F., Su, Z., Miller, M.D., Denu, J.M., Phillips Jr., G.N., Enzyme Discovery for Natural Product Biosynthesis (NatPro)

(2016) Nat Commun 7: 13387-13387

Released	2016-02-10
Method	X-RAY DIFFRACTION 2.287 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4A (protein) peptide H3K23me3 (19-28) (protein)

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5WRO \| pdb_00005wro	Download File View File

Crystal structure of Drosophila enolase

Zhang, Z., Shi, Z.

(2017) Acta Crystallogr F Struct Biol Commun 73: 228-234

Released	2017-04-26
Method	X-RAY DIFFRACTION 2.015 Å
Organisms	Drosophila melanogaster
Macromolecule	Enolase (protein)
Unique Ligands	CD, CL, CO, GOL, SO4

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6BG9 \| pdb_00006bg9	Download File View File

HYBRID NMR/CRYO-EM STRUCTURE OF THE HIV-1 RNA DIMERIZATION SIGNAL

Summers, M.F.

(2018) Structure 26: 490-498.e3

Released	2018-02-21
Method	ELECTRON MICROSCOPY 9 Å SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	RNA dimerization signal (nucleic acid)

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6C54 \| pdb_00006c54	Download File View File

Ebola nucleoprotein nucleocapsid-like assembly and the asymmetric unit

Su, Z., Wu, C., Pintilie, G.D., Chiu, W., Amarasinghe, G.K., Leung, D.W.

(2018) Cell 172: 966-978.e12

Released	2018-03-07
Method	ELECTRON MICROSCOPY 5.8 Å
Organisms	Zaire ebolavirus
Macromolecule	Nucleoprotein (protein)

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6LKA \| pdb_00006lka	Download File View File

Crystal Structure of EV71-3C protease with a Novel Macrocyclic Compounds

Li, P., Wu, S.Q., Xiao, T.Y.C., Li, Y.L., Su, Z.M., Hao, F., Hu, G.P., Hu, J., Lin, F.S., Chen, X.S., Gu, Z.X., He, H.Y., Li, J., Chen, S.H.

(2020) Bioorg Med Chem 28: 115551-115551

Released	2020-06-17
Method	X-RAY DIFFRACTION 2.033 Å
Organisms	Enterovirus A71
Macromolecule	3C proteinase (protein)
Unique Ligands	EGF

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6LKV \| pdb_00006lkv	Download File View File

Structural and functional insights into macrophage migration inhibitory factor from Oncomelania hupensis, the intermediate host of Schistosoma japonicum

Su, Z.M., Tian, X.Y., Li, H.J., Wei, Z.M., Chen, L.F., Ren, H.X., Peng, W.F., Tang, C.T.

(2020) Biochem J 477: 2133-2151

Released	2020-07-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Oncomelania hupensis
Macromolecule	Macrophage migration inhibitory factor (protein)
Unique Ligands	CL, SO4

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6LKW \| pdb_00006lkw	Download File View File

Structural and functional insights into macrophage migration inhibitory factor from Oncomelania hupensis, the intermediate host of Schistosoma japonicum

Su, Z.M., Tian, X.Y., Li, H.J., Wei, Z.M., Chen, L.F., Ren, H.X., Peng, W.F., Tang, C.T.

(2020) Biochem J 477: 2133-2151

Released	2020-07-22
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Oncomelania hupensis
Macromolecule	Macrophage migration inhibitory factor (protein)
Unique Ligands	CL

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6LR3 \| pdb_00006lr3	Download File View File

Structural and functional insights into macrophage migration inhibitory factor from Oncomelania hupensis, the intermediate host of Schistosoma japonicum

Su, Z.M., Tian, X.Y., Li, H.J., Wei, Z.M., Chen, L.F., Ren, H.X., Peng, W.F., Tang, C.T.

(2020) Biochem J 477: 2133-2151

Released	2020-07-22
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Oncomelania hupensis
Macromolecule	Macrophage migration inhibitory factor (protein)
Unique Ligands	SO4

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6NAV \| pdb_00006nav	Download File View File

Cryo-EM reconstruction of Sulfolobus islandicus LAL14/1 Pilus

Wang, F., Cvirkaite-Krupovic, V., Prangishvili, D., Krupovic, M., Egelman, E.H.

(2019) Nat Microbiol 4: 1401-1410

Released	2019-05-08
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Saccharolobus islandicus LAL14/1
Macromolecule	M9UD72 (protein)

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6OJ0 \| pdb_00006oj0	Download File View File

Cryo-EM reconstruction of Sulfolobus polyhedral virus 1 (SPV1)

Wang, F., Liu, Y., Conway, J.F., Krupovic, M., Prangishvili, D., Egelman, E.H.

(2019) Proc Natl Acad Sci U S A 116: 22591-22597

Released	2019-10-02
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Sulfolobus polyhedral virus 1
Macromolecule	Structural protein VP4 (protein) Uncharacterized protein (protein)

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6P9E \| pdb_00006p9e	Download File View File

Crystal structure of IL-36gamma complexed to A-552

Argiriadi, M.A., Todorovic, T., Su, Z., Putman, B., Kakavas, S.J., Salte, K.M., McDonald, H.A., Wetter, J.B., Paulsboe, S.E., Sun, Q., Gerstein, C.E., Medina, L., Sielaff, B., Sadhukhan, R., Stockmann, H., Richardson, P.L., Qiu, W., Henry, R.F., Herold, J.M., Shotwell, J.B., McGaraughty, S.P., Honore, P., Gopalakrishnan, S.M., Sun, C.C., Scott, V.E.

(2019) Sci Rep 9: 9089-9089

Released	2019-06-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-36 gamma (protein)
Unique Ligands	O6D

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6PMO \| pdb_00006pmo	Download File View File

Co-crystal structure of the Geobacillus kaustophilus glyQ T-box riboswitch discriminator domain in complex with tRNA-Gly

Li, S., Zhang, J.

(2019) Nat Struct Mol Biol 26: 1094-1105

Released	2019-11-20
Method	X-RAY DIFFRACTION 2.65703362888 Å
Organisms	Geobacillus kaustophilus
Macromolecule	T-box riboswitch discriminator (nucleic acid) tRNA-Gly (nucleic acid)
Unique Ligands	IR, MG

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6POM \| pdb_00006pom	Download File View File

Cryo-EM structure of the full-length Bacillus subtilis glyQS T-box riboswitch in complex with tRNA-Gly

Li, S., Su, Z., Zhang, J., Chiu, W.

(2019) Nat Struct Mol Biol 26: 1094-1105

Released	2019-11-20
Method	ELECTRON MICROSCOPY 4.9 Å
Organisms	Bacillus subtilis
Macromolecule	T-box GlyQS leader (155-MER) (nucleic acid) tRNAGly (75-MER) (nucleic acid)

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6UES \| pdb_00006ues	Download File View File

Apo SAM-IV Riboswitch

Zhang, K., Li, S., Kappel, K., Pintilie, G., Su, Z., Mou, T., Schmid, M., Das, R., Chiu, W.

(2019) Nat Commun 10: 5511-5511

Released	2019-12-18
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Mycobacterium sp. MCS
Macromolecule	RNA (119-MER) (nucleic acid)

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6UET \| pdb_00006uet	Download File View File

SAM-bound SAM-IV riboswitch

Zhang, K., Li, S., Kappel, K., Pintilie, G., Su, Z., Mou, T., Schmid, M., Das, R., Chiu, W.

(2019) Nat Commun 10: 5511-5511

Released	2019-12-18
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Mycobacterium sp. MCS
Macromolecule	RNA (119-MER) (nucleic acid)
Unique Ligands	SAM

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6V7B \| pdb_00006v7b	Download File View File

Cryo-EM reconstruction of Pyrobaculum filamentous virus 2 (PFV2)

Wang, F., Baquero, D.P., Su, Z., Prangishvili, D., Krupovic, M., Egelman, E.H.

(2020) Virus Evol 6: veaa023-veaa023

Released	2020-04-01
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Pyrobaculum filamentous virus 1
Macromolecule	Structural protein VP1 (protein) Structural protein VP2 (protein) A-DNA (nucleic acid)