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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Li, T."

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Search Summary

This query matches 338 Structures.

Refinements

Structure Determination Methodology

experimental (338)

Scientific Name of Source Organism

	Homo sapiens (169)
	synthetic construct (24)
	Leishmania major (11)
	Mus musculus (11)
	Plasmodium vivax (9)
	Severe acute respiratory syndrome coronavirus 2 (9)
	Saccharomyces cerevisiae (7)
	Salmonella enterica subsp. enterica serovar Typhimurium (7)
	Sus scrofa (7)
	Human immunodeficiency virus 1 (6)

More...

Taxonomy

	Eukaryota (240)
	Bacteria (70)
	Riboviria (28)
	other sequences (24)
	Duplodnaviria (11)
	Archaea (6)
	Eukaryota (eukaryotes) (2)
	unclassified viruses (1)

Experimental Method

	ELECTRON MICROSCOPY (202)
	X-RAY DIFFRACTION (133)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (338)
	DNA (39)
	RNA (15)

Refinement Resolution (Å)

	1.0 - 1.5 (16)
	1.5 - 2.0 (42)
	2.0 - 2.5 (52)
	2.5 - 3.0 (44)
	3.0 - 3.5 (78)
	3.5 - 4.0 (54)
	4.0 - 4.5 (18)
	> 4.5 (31)

Release Date

	2005 - 2009 (6)
	2010 - 2014 (16)
	2015 - 2019 (80)
	2020 - 2024 (225)
	2025 - 2029 (11)

Enzyme Classification Name

	Hydrolases (76)
	Transferases (94)
	Translocases (12)
	Ligases (8)
	Lyases (3)
	Oxidoreductases (5)
	Isomerases (2)

Membrane Protein Annotation

	mpstruc (39)
	PDBTM (46)
	MemProtMD (32)
	OPM (25)

Symmetry Type

	Asymmetric (220)
	Cyclic (102)
	Dihedral (8)
	Helical (5)
	Icosahedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (12)
	All beta proteins (9)
	Alpha and beta proteins (a/b) (11)
	Artifacts (8)
	All alpha proteins (5)

AllSelected

1 to 25 of 338 Structures

Page 1 of 14

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1TVB \| pdb_00001tvb	Download File View File

Crystal structure of Melanoma Antigen gp100(209-217) Bound to Human Class I MHC HLA-A2

Borbulevych, O.Y., Baker, B.M.

(2005) J Immunol 174: 4812-4820

Released	2005-04-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) epitope of Melanocyte protein Pmel 17 (protein)
Unique Ligands	GOL

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1TVH \| pdb_00001tvh	Download File View File

Crystal structure of Modified Melanoma Antigen gp100(209-T2M) Bound to Human Class I MHC HLA-A2

Borbulevych, O.Y., Baker, B.M.

(2005) J Immunol 174: 4812-4820

Released	2005-04-19
Method	X-RAY DIFFRACTION 1.802 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) epitope of Melanocyte protein Pmel 17 (protein)
Unique Ligands	GOL

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2GKS \| pdb_00002gks	Download File View File

Crystal Structure of the Bi-functional ATP Sulfurylase-APS Kinase from Aquifex aeolicus, a Chemolithotrophic Thermophile

Yu, Z., MacRea, I.J., Lansdon, E.B., Segel, I.H., Fisher, A.J.

(2007) J Mol Biology 365: 732-743

Released	2007-03-06
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Aquifex aeolicus
Macromolecule	Bifunctional SAT/APS kinase (protein)
Unique Ligands	ADP

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2NN3 \| pdb_00002nn3	Download File View File

structure of pro-sf-caspase-1

Fisher, A.J., Ni, L.

To be published

Released	2007-10-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Spodoptera frugiperda
Macromolecule	Caspase-1 (protein)

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2OQ2 \| pdb_00002oq2	Download File View File

Crystal structure of yeast PAPS reductase with PAP, a product complex

Yu, Z., Fisher, A.J.

(2008) Biochemistry 47: 12777-12786

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Phosphoadenosine phosphosulfate reductase (protein)
Unique Ligands	A3P

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2WUU \| pdb_00002wuu	Download File View File

Structure of N-myristoyltransferase from L. donovani

Brannigan, J.A., Smith, B.A., Yu, Z., Hodgkinson, M.R., Leatherbarrow, R.J., Tate, E.W., Brzozowski, A.M., Smith, D.F., Wilkinson, A.J.

(2010) J Mol Biology 396: 985

Released	2009-12-01
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Leishmania donovani
Macromolecule	N-MYRISTOYLTRANSFERASE (protein)
Unique Ligands	NHW

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3J6C \| pdb_00003j6c	Download File View File

Cryo-EM structure of MAVS CARD filament

Xu, H., He, X., Zheng, H., Huang, L.J., Hou, F., Yu, Z., de la Cruz, M.J., Borkowski, B., Zhang, X., Chen, Z.J., Jiang, Q.-X.

(2014) Elife 3: e01489-e01489

Released	2014-03-05
Method	ELECTRON MICROSCOPY 9.6 Å
Organisms	Homo sapiens
Macromolecule	Mitochondrial antiviral-signaling protein (protein)

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3MOW \| pdb_00003mow	Download File View File

Crystal structure of SHP2 in complex with a tautomycetin analog TTN D-1

Zhang, Z.-Y., Liu, S., Yu, Z., Yu, X.

To be published

Released	2011-05-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 11 (protein)
Unique Ligands	B2B

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3N2Y \| pdb_00003n2y	Download File View File

Crystal structure of tyrosyl-tRNA synthetase complexed with p-(2-tetrazolyl)-phenylalanine

Wu, M., Li, J., Zang, J.

(2010) J Am Chem Soc 132: 14812-14818

Released	2010-11-03
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Tyrosyl-tRNA synthetase (protein)
Unique Ligands	TEF

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3O5X \| pdb_00003o5x	Download File View File

Crystal structure of the oncogenic tyrosine phosphatase SHP2 complexed with a salicylic acid-based small molecule inhibitor

Zhang, Z.-Y., Zhang, X., He, Y., Liu, S., Yu, Z., Jiang, Z., Yang, Z., Dong, Y., Nabinger, S.C., Wu, L., Gunawan, A.M., Wang, L., Chan, R.J.

(2010) J Med Chem 53: 2482-2493

Released	2010-08-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 11 (protein)
Unique Ligands	JZG

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3RIK \| pdb_00003rik	Download File View File

The acid beta-glucosidase active site exhibits plasticity in binding 3,4,5,6-tetrahydroxyazepane-based inhibitors: implications for pharmacological chaperone design for gaucher disease

Orwig, S.D., Lieberman, R.L.

(2011) Biochemistry 50: 10647-10657

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Homo sapiens
Macromolecule	Glucosylceramidase (protein)
Unique Ligands	3RI, NAG, SO4

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3RIL \| pdb_00003ril	Download File View File

The acid beta-glucosidase active site exhibits plasticity in binding 3,4,5,6-tetrahydroxyazepane-based inhibitors: implications for pharmacological chaperone design for gaucher disease

Orwig, S.D., Lieberman, R.L.

(2011) Biochemistry 50: 10647-10657

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Glucosylceramidase (protein)
Unique Ligands	3RK, NAG, SO4

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4B10 \| pdb_00004b10	Download File View File

Plasmodium vivax N-myristoyltransferase with a non-hydrolysable co- factor

Yu, Z., Brannigan, J.A., Moss, D.K., Brzozowski, A.M., Wilkinson, A.J., Holder, A.A., Tate, E.W., Leatherbarrow, R.J.

(2012) J Med Chem 55: 8879

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Plasmodium vivax
Macromolecule	GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE (protein)
Unique Ligands	CL, DMS, MG, NHW, SO4

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4B11 \| pdb_00004b11	Download File View File

Plasmodium vivax N-myristoyltransferase with a bound benzofuran inhibitor (compound 13)

Yu, Z., Brannigan, J.A., Moss, D.K., Brzozowski, A.M., Wilkinson, A.J., Holder, A.A., Tate, E.W., Leatherbarrow, R.J.

(2012) J Med Chem 55: 8879

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Plasmodium vivax
Macromolecule	GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE (protein)
Unique Ligands	7I1, CL, DMS, MG, NHW, SO4

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4B12 \| pdb_00004b12	Download File View File

Plasmodium vivax N-myristoyltransferase with a bound benzofuran inhibitor (compound 23)

Yu, Z., Brannigan, J.A., Moss, D.K., Brzozowski, A.M., Wilkinson, A.J., Holder, A.A., Tate, E.W., Leatherbarrow, R.J.

(2012) J Med Chem 55: 8879

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Plasmodium vivax
Macromolecule	GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE (protein)
Unique Ligands	C23, CL, DMS, MG, NHW, SO4

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4B13 \| pdb_00004b13	Download File View File

Plasmodium vivax N-myristoyltransferase with a bound benzofuran inhibitor (compound 25)

Yu, Z., Brannigan, J.A., Moss, D.K., Brzozowski, A.M., Wilkinson, A.J., Holder, A.A., Tate, E.W., Leatherbarrow, R.J.

(2012) J Med Chem 55: 8879

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Plasmodium vivax
Macromolecule	GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE (protein)
Unique Ligands	CL, MG, NHW, SO4, X25

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4B14 \| pdb_00004b14	Download File View File

Plasmodium vivax N-myristoyltransferase with a bound benzofuran inhibitor (compound 26)

Yu, Z., Brannigan, J.A., Moss, D.K., Brzozowski, A.M., Wilkinson, A.J., Holder, A.A., Tate, E.W., Leatherbarrow, R.J.

(2012) J Med Chem 55: 8879

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Plasmodium vivax
Macromolecule	GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE (protein)
Unique Ligands	4XB, CL, DMS, MG, NHW, SO4

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4BBH \| pdb_00004bbh	Download File View File

Plasmodium vivax N-myristoyltransferase with a bound benzothiophene inhibitor

Rackham, M.D., Brannigan, J.A., Moss, D.K., Yu, Z., Wilkinson, A.J., Holder, A.A., Tate, E.W., Leatherbarrow, R.J.

(2013) J Med Chem 56: 371

Released	2012-12-05
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Plasmodium vivax
Macromolecule	GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE (protein)
Unique Ligands	CL, DMS, MG, NHW, SO4, YBN

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4JS9 \| pdb_00004js9	Download File View File

Structural Characterization of Inducible Nitric Oxide Synthase Substituted With Mesoheme

Hannibal, L., Page, R.C., Bolisetty, K., Yu, Z., Misra, S., Stuehr, D.J.

To be published

Released	2014-04-23
Method	X-RAY DIFFRACTION 2.784 Å
Organisms	Mus musculus
Macromolecule	Nitric oxide synthase, inducible (protein)
Unique Ligands	H4B, MH0, SO4

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4O9F \| pdb_00004o9f	Download File View File

crystal structure of horse MAVS card domain mutant R64C

Zhang, X., He, X.

(2014) Elife 3: e01489-e01489

Released	2014-03-12
Method	X-RAY DIFFRACTION 2.348 Å
Organisms	Equus caballus
Macromolecule	mitochondrial antiviral signaling protein (MAVS) (protein)

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4O9L \| pdb_00004o9l	Download File View File

crystal structure of horse MAVS card domain mutant E26R

Zhang, X., He, X.

(2014) Elife 3: e01489-e01489

Released	2014-03-12
Method	X-RAY DIFFRACTION 1.944 Å
Organisms	Equus caballus
Macromolecule	mitochondrial antiviral signaling protein (MAVS) (protein)

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4OWP \| pdb_00004owp	Download File View File

Crystal structure of rpn11 in a heterodimer complex with rpn8, representing the active portion of the proteasome lid.

Yu, Z., Mansour, W., Nakasone, M.A., Glickman, M.H., Dvir, H.

To be published

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	26S proteasome regulatory subunit RPN11 (protein) 26S proteasome regulatory subunit RPN8 (protein)
Unique Ligands	ZN

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4PKM \| pdb_00004pkm	Download File View File

Crystal Structure of Bacillus thuringiensis Cry51Aa1 Protoxin at 1.65 Angstroms Resolution

Xu, C., Chinte, U., Chen, L., Yao, Q., Zhou, D., Meng, Y., Li, L., Rose, J., Bi, L.J., Yu, Z., Sun, M., Wang, B.C.

(2015) Biochem Biophys Res Commun 462: 184-189

Released	2015-06-03
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Bacillus thuringiensis F14-1
Macromolecule	Cry51Aa1 (protein)
Unique Ligands	GLY, GOL, SO4

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4PVG \| pdb_00004pvg	Download File View File

Crystal structure of protein tyrosine phosphatase Shp2 catalytic domain complex with small molecular compound L88N79

Zhang, Z.-Y., Zeng, L., Liu, D., Yu, Z.

To be published

Released	2015-04-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 11 (protein)
Unique Ligands	2WT