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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Gan, L."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Byrnievirus HK97 (8)
	Homo sapiens (6)
	Rattus norvegicus (2)
	Tritrichomonas suis (2)
	synthetic construct (2)
	Mus musculus (1)
	Thunbergia laurifolia (1)

Taxonomy

	Eukaryota (12)
	Duplodnaviria (8)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (17)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

	Protein (20)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)
	> 4.5 (4)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (8)
	2020 - 2024 (7)

Enzyme Classification Name

	Oxidoreductases (2)
	Transferases (1)
	Hydrolases (1)

Symmetry Type

	Cyclic (9)
	Asymmetric (4)
	Icosahedral (8)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	All beta proteins (3)
	Alpha and beta proteins (a/b) (2)
	Designed proteins (1)

AllSelected

1 to 20 of 20 Structures

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1I1A \| pdb_00001i1a	Download File View File

CRYSTAL STRUCTURE OF THE NEONATAL FC RECEPTOR COMPLEXED WITH A HETERODIMERIC FC

Martin, W.L., West Jr., A.P., Gan, L., Bjorkman, P.J.

(2001) Mol Cell 7: 867-877

Released	2001-02-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Rattus norvegicus
Macromolecule	BETA-2-MICROGLOBULIN (protein) IG GAMMA-2A CHAIN C REGION (protein) NEONATAL FC RECEPTOR A (protein)
Unique Ligands	CYS, NAG
Unique branched monosaccharides	BMA, FUC, FUL, MAN, NAG, NDG

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1I1C \| pdb_00001i1c	Download File View File

NON-FCRN BINDING FC FRAGMENT OF RAT IGG2A

Martin, W.L., West Jr., A.P., Gan, L., Bjorkman, P.J.

(2001) Mol Cell 7: 867-877

Released	2001-02-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Rattus norvegicus
Macromolecule	IG GAMMA-2A CHAIN C REGION (protein)
Unique branched monosaccharides	BMA, FUC, FUL, MAN, NAG

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1L6X \| pdb_00001l6x	Download File View File

FC FRAGMENT OF RITUXIMAB BOUND TO A MINIMIZED VERSION OF THE B-DOMAIN FROM PROTEIN A CALLED Z34C

Idusogie, E.E., Presta, L.G., Santoro-Gazzano, H., Totpal, K., Wong, P.Y., Ultsch, M., Meng, Y.G., Mullkerrin, M.G.

(2000) J Immunol 164: 4178-4184

Released	2002-04-10
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN CONSTANT REGION (protein) Minimized B-domain of Protein A Z34C (protein)
Unique branched monosaccharides	BMA, FUL, GAL, MAN, NAG

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1LRT \| pdb_00001lrt	Download File View File

CRYSTAL STRUCTURE OF TERNARY COMPLEX OF TRITRICHOMONAS FOETUS INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE: STRUCTURAL CHARACTERIZATION OF NAD+ SITE IN MICROBIAL ENZYME

Gan, L., Petsko, G.A., Hedstrom, L.

(2003) Biochemistry 41: 13309-13317

Released	2003-07-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Tritrichomonas suis
Macromolecule	INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	BOG, IMP, K, TAD, TRS

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1PVN \| pdb_00001pvn	Download File View File

The crystal structure of the complex between IMP dehydrogenase catalytic domain and a transition state analogue MZP

Gan, L., Seyedsayamdost, M., Shuto, S., Matsuda, A., Petsko, G.A., Hedstrom, L.

(2003) Biochemistry 42: 857-863

Released	2003-07-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tritrichomonas suis
Macromolecule	Inosine-5'-monophosphate dehydrogenase (protein)
Unique Ligands	K, MZP, TRS

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2FRP \| pdb_00002frp	Download File View File

Bacteriophage HK97 Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 7.5 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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2FS3 \| pdb_00002fs3	Download File View File

Bacteriophage HK97 K169Y Head I

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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2FSY \| pdb_00002fsy	Download File View File

Bacteriophage HK97 Pepsin-treated Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

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2FT1 \| pdb_00002ft1	Download File View File

Bacteriophage HK97 Head II

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

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2FTE \| pdb_00002fte	Download File View File

Bacteriophage HK97 Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

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2GP1 \| pdb_00002gp1	Download File View File

Bacteriophage HK97 Prohead II crystal structure

Gertsman, I., Gan, L., Johnson, J.E.

To be published

Released	2006-05-02
Method	X-RAY DIFFRACTION 5.2 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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3DDX \| pdb_00003ddx	Download File View File

HK97 bacteriophage capsid Expansion Intermediate-II model

Lee, K.K., Gan, L., Conway, J.F., Hendrix, R.W., Steven, A.C., Johnson, J.E.

(2008) Structure 16: 1491-1502

Released	2008-11-04
Method	ELECTRON MICROSCOPY 14 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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3E8K \| pdb_00003e8k	Download File View File

Crystal structure of HK97 Prohead II

Gertsman, I., Speir, J., Johnson, J.E.

(2009) Nature 458: 646-650

Released	2009-02-17
Method	X-RAY DIFFRACTION 3.65 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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6XKB \| pdb_00006xkb	Download File View File

Crystal structure of SR-related and CTD-associated factor 4(SCAF4-CID)with peptide S2,S5p-CTD

Zhou, M.Q., Dong, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2022) FEBS Lett 596: 249-259

Released	2021-01-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	S2,S5p-CTD peptide (protein) SR-related and CTD-associated factor 4 (protein)
Unique Ligands	UNX

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7T63 \| pdb_00007t63	Download File View File

Crystal structure of a delta 6 18:0-ACP desaturase from Thunbergia laurifolia

Liu, Q., Chai, J., Shanklin, J.

(2022) Proc Natl Acad Sci U S A 119: e2201160119-e2201160119

Released	2022-07-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thunbergia laurifolia
Macromolecule	DESATURASE (protein)
Unique Ligands	FE2

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8J0K \| pdb_00008j0k	Download File View File

Crystal structure of human TFAP2A in complex with DNA

Liu, K., Xiao, Y.Q., Li, W.F., Min, J.R.

(2023) Nucleic Acids Res 51: 8270-8282

Released	2023-07-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Transcription factor AP-2-alpha (protein) DNA (5'-D(CPTPGPCPCPTPCPGPGPGPCPAPC)-3') (nucleic acid) DNA (5'-D(GPTPGPCPCPCPGPAPGPGPCPAPG)-3') (nucleic acid)
Unique Ligands	GOL, PG3, PGE

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8J0L \| pdb_00008j0l	Download File View File

Structure of DNA binding Domain of Human TFAP2A

Liu, K., Xiao, Y.Q., Gan, L.Y., Min, J.R.

(2023) Nucleic Acids Res 51: 8270-8282

Released	2023-07-05
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Homo sapiens
Macromolecule	Transcription factor AP-2-alpha (protein)
Unique Ligands	GOL

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8J0Q \| pdb_00008j0q	Download File View File

Structure of DNA binding domain of human TFAP2B

Liu, K., Xiao, Y.Q., Li, W.F., Min, J.R.

(2023) Nucleic Acids Res 51: 8270-8282

Released	2023-07-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Transcription factor AP-2-beta (protein)
Unique Ligands	GOL

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8J0R \| pdb_00008j0r	Download File View File

Structure of human TFAP2A in complex with DNA

Liu, K., Xiao, Y.Q., Li, W.F., Min, J.R.

(2023) Nucleic Acids Res 51: 8270-8282

Released	2023-07-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Transcription factor AP-2-alpha (protein) DNA (5'-D(CPTPGPCPCPTPCPAPGPGPCPAPC)-3') (nucleic acid) DNA (5'-D(GPTPGPCPCPTPGPAPGPGPCPAPG)-3') (nucleic acid)
Unique Ligands	GOL, PEG, PG3, PG4

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8WCP \| pdb_00008wcp	Download File View File

Cryo-EM structure of human disease-associated P301L Tau amyloid fibril from mouse brain

Liu, K.E., Zhao, W.B., Liu, C.

(2024) Cell Discov 10: 27-27

Released	2024-06-19
Method	ELECTRON MICROSCOPY 3.28 Å
Organisms	Mus musculus
Macromolecule	Island A (protein) Island B (protein) P301L Tau amyloid fibril from rTg4510 mice (protein)

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1I1A | pdb_00001i1a

CRYSTAL STRUCTURE OF THE NEONATAL FC RECEPTOR COMPLEXED WITH A HETERODIMERIC FC

1I1C | pdb_00001i1c

NON-FCRN BINDING FC FRAGMENT OF RAT IGG2A

1L6X | pdb_00001l6x

FC FRAGMENT OF RITUXIMAB BOUND TO A MINIMIZED VERSION OF THE B-DOMAIN FROM PROTEIN A CALLED Z34C

1LRT | pdb_00001lrt

CRYSTAL STRUCTURE OF TERNARY COMPLEX OF TRITRICHOMONAS FOETUS INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE: STRUCTURAL CHARACTERIZATION OF NAD+ SITE IN MICROBIAL ENZYME

1PVN | pdb_00001pvn

The crystal structure of the complex between IMP dehydrogenase catalytic domain and a transition state analogue MZP

2FRP | pdb_00002frp

Bacteriophage HK97 Expansion Intermediate IV

2FS3 | pdb_00002fs3

Bacteriophage HK97 K169Y Head I

2FSY | pdb_00002fsy

Bacteriophage HK97 Pepsin-treated Expansion Intermediate IV

2FT1 | pdb_00002ft1

Bacteriophage HK97 Head II

2FTE | pdb_00002fte

Bacteriophage HK97 Expansion Intermediate IV

2GP1 | pdb_00002gp1

Bacteriophage HK97 Prohead II crystal structure

3DDX | pdb_00003ddx

HK97 bacteriophage capsid Expansion Intermediate-II model

3E8K | pdb_00003e8k

Crystal structure of HK97 Prohead II

6XKB | pdb_00006xkb

Crystal structure of SR-related and CTD-associated factor 4(SCAF4-CID)with peptide S2,S5p-CTD

7T63 | pdb_00007t63

Crystal structure of a delta 6 18:0-ACP desaturase from Thunbergia laurifolia

8J0K | pdb_00008j0k

Crystal structure of human TFAP2A in complex with DNA

8J0L | pdb_00008j0l

Structure of DNA binding Domain of Human TFAP2A

8J0Q | pdb_00008j0q

Structure of DNA binding domain of human TFAP2B

8J0R | pdb_00008j0r

Structure of human TFAP2A in complex with DNA

8WCP | pdb_00008wcp

Cryo-EM structure of human disease-associated P301L Tau amyloid fibril from mouse brain

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1I1A | pdb_00001i1a

1I1C | pdb_00001i1c

1L6X | pdb_00001l6x

1LRT | pdb_00001lrt

1PVN | pdb_00001pvn

2FRP | pdb_00002frp

2FS3 | pdb_00002fs3

2FSY | pdb_00002fsy

2FT1 | pdb_00002ft1

2FTE | pdb_00002fte

2GP1 | pdb_00002gp1

3DDX | pdb_00003ddx

3E8K | pdb_00003e8k

6XKB | pdb_00006xkb

7T63 | pdb_00007t63

8J0K | pdb_00008j0k

8J0L | pdb_00008j0l

8J0Q | pdb_00008j0q

8J0R | pdb_00008j0r

8WCP | pdb_00008wcp