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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Fujita, J."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Staphylococcus aureus subsp. aureus MRSA252 (9)
	Homo sapiens (7)
	Klebsiella pneumoniae (5)
	Thermococcus kodakarensis KOD1 (4)
	Escherichia coli (3)
	Staphylococcus aureus (3)
	Thermus thermophilus HB27 (2)
	Vicugna pacos (2)
	Escherichia coli K-12 (1)
	Mycoplasma mobile 163K (1)

More...

Taxonomy

	Bacteria (24)
	Eukaryota (9)
	Archaea (4)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (26)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

Protein (31)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (12)
	2.0 - 2.5 (7)
	2.5 - 3.0 (5)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (2)
	2015 - 2019 (13)
	2020 - 2024 (14)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (7)
	Hydrolases (1)

Symmetry Type

	Asymmetric (24)
	Cyclic (6)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (10)
	Alpha and beta proteins (a/b) (9)
	Artifacts (9)

AllSelected

1 to 25 of 31 Structures

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1UOH \| pdb_00001uoh	Download File View File

HUMAN GANKYRIN

Krzywda, S., Brzozowski, A.M., Wilkinson, A.J.

(2004) J Biological Chem 279: 1541

Released	2003-10-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 10 (protein)

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3WQT \| pdb_00003wqt	Download File View File

Staphylococcus aureus FtsA complexed with AMPPNP

Fujita, J., Maeda, Y., Miyazaki, Y., Inoue, T., Matsumura, H.

(2014) FEBS Lett 588: 1879-1885

Released	2014-10-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Cell division protein FtsA (protein)
Unique Ligands	ANP, CL, MG

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3WQU \| pdb_00003wqu	Download File View File

Staphylococcus aureus FtsA complexed with ATP

Fujita, J., Maeda, Y., Miyazaki, Y., Inoue, T., Matsumura, H.

(2014) FEBS Lett 588: 1879-1885

Released	2014-10-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Cell division protein FtsA (protein)
Unique Ligands	ATP, MG

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5H5G \| pdb_00005h5g	Download File View File

Staphylococcus aureus FtsZ-GDP in T and R states

Fujita, J., Harada, R., Maeda, Y., Saito, Y., Mizohata, E., Inoue, T., Shigeta, Y., Matsumura, H.

(2017) J Struct Biol 198: 65-73

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Cell division protein FtsZ (protein)
Unique Ligands	CA, GDP

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5H5H \| pdb_00005h5h	Download File View File

Staphylococcus aureus FtsZ-GDP R29A mutant in T state

Fujita, J., Harada, R., Maeda, Y., Saito, Y., Mizohata, E., Inoue, T., Shigeta, Y., Matsumura, H.

(2017) J Struct Biol 198: 65-73

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Cell division protein FtsZ (protein)
Unique Ligands	CA, GDP

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5H5I \| pdb_00005h5i	Download File View File

Staphylococcus aureus FtsZ-GDP R29A mutant in R state

Fujita, J., Harada, R., Maeda, Y., Saito, Y., Mizohata, E., Inoue, T., Shigeta, Y., Matsumura, H.

(2017) J Struct Biol 198: 65-73

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Cell division protein FtsZ (protein)
Unique Ligands	GDP

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5XDT \| pdb_00005xdt	Download File View File

Staphylococcus aureus FtsZ 12-316 complexed with TXA707

Fujita, J., Maeda, Y., Mizohata, E., Inoue, T., Kaul, M., Parhi, A.K., LaVoie, E.J., Pilch, D.S., Matsumura, H.

(2017) ACS Chem Biol 12: 1947-1955

Released	2017-08-02
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Cell division protein FtsZ (protein)
Unique Ligands	CA, GDP, MB3, ZI7

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5XDU \| pdb_00005xdu	Download File View File

Staphylococcus aureus FtsZ 12-316 complexed with TXA6101

Fujita, J., Maeda, Y., Mizohata, E., Inoue, T., Kaul, M., Parhi, A.K., LaVoie, E.J., Pilch, D.S., Matsumura, H.

(2017) ACS Chem Biol 12: 1947-1955

Released	2017-08-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Cell division protein FtsZ (protein)
Unique Ligands	CA, GDP, ZI6

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5XDV \| pdb_00005xdv	Download File View File

Staphylococcus aureus FtsZ 12-316 G196S complexed with TXA6101

Fujita, J., Maeda, Y., Mizohata, E., Inoue, T., Kaul, M., Parhi, A.K., LaVoie, E.J., Pilch, D.S., Matsumura, H.

(2017) ACS Chem Biol 12: 1947-1955

Released	2017-08-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Cell division protein FtsZ (protein)
Unique Ligands	CA, GDP, ZI6

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5XDW \| pdb_00005xdw	Download File View File

Staphylococcus aureus FtsZ 12-316 G196S

Fujita, J., Maeda, Y., Mizohata, E., Inoue, T., Kaul, M., Parhi, A.K., LaVoie, E.J., Pilch, D.S., Matsumura, H.

(2017) ACS Chem Biol 12: 1947-1955

Released	2017-08-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Cell division protein FtsZ (protein)
Unique Ligands	CA, GDP

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5XNC \| pdb_00005xnc	Download File View File

Crystal structure of the branched-chain polyamine synthase (BpsA) in complex with N4-aminopropylspermidine and 5-methylthioadenosine

Mizohata, E., Tse, K.M., Fujita, J., Inoue, T.

(2017) FEBS J 284: 3684-3701

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Thermococcus kodakarensis KOD1
Macromolecule	N(4)-bis(aminopropyl)spermidine synthase (protein)
Unique Ligands	EDO, FE, GOL, MTA, N4P, PEG

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5XNF \| pdb_00005xnf	Download File View File

Crystal structure of the branched-chain polyamine synthase (BpsA) from Thermococcus kodakarensis

Mizohata, E., Tse, K.M., Fujita, J., Inoue, T.

(2017) FEBS J 284: 3684-3701

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermococcus kodakarensis KOD1
Macromolecule	N(4)-bis(aminopropyl)spermidine synthase (protein)
Unique Ligands	FE, GOL, SO4

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5XNH \| pdb_00005xnh	Download File View File

Crystal structure of the branched-chain polyamine synthase (BpsA) in complex with spermidine

Mizohata, E., Tse, K.M., Fujita, J., Inoue, T.

(2017) FEBS J 284: 3684-3701

Released	2017-10-04
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Thermococcus kodakarensis KOD1
Macromolecule	N(4)-bis(aminopropyl)spermidine synthase (protein)
Unique Ligands	FE, SPD

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6J26 \| pdb_00006j26	Download File View File

Crystal structure of the branched-chain polyamine synthase from Thermococcus kodakarensis (Tk-BpsA) in complex with N4-bis(aminopropyl)spermidine and 5'-methylthioadenosine

Mizohata, E., Toyoda, M., Fujita, J., Inoue, T.

(2019) FEBS J 286: 3926-3940

Released	2019-06-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermococcus kodakarensis KOD1
Macromolecule	N(4)-bis(aminopropyl)spermidine synthase (protein)
Unique Ligands	B5L, FE, MTA

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6J27 \| pdb_00006j27	Download File View File

Crystal structure of the branched-chain polyamine synthase from Thermus thermophilus (Tth-BpsA) in complex with N4-aminopropylspermidine and 5'-methylthioadenosine

Mizohata, E., Toyoda, M., Fujita, J., Inoue, T.

(2019) FEBS J 286: 3926-3940

Released	2019-06-26
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Thermus thermophilus HB27
Macromolecule	N(4)-bis(aminopropyl)spermidine synthase (protein)
Unique Ligands	FE, MTA, N4P, PEG, PGE

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6J28 \| pdb_00006j28	Download File View File

Crystal structure of the branched-chain polyamine synthase C9 mutein from Thermus thermophilus (Tth-BpsA C9) in complex with N4-aminopropylspermidine and 5'-methylthioadenosine

Mizohata, E., Toyoda, M., Fujita, J., Inoue, T.

(2019) FEBS J 286: 3926-3940

Released	2019-06-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus HB27
Macromolecule	N(4)-bis(aminopropyl)spermidine synthase (protein)
Unique Ligands	FE, MES, MTA, N4P

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6KVP \| pdb_00006kvp	Download File View File

S. aureus FtsZ in complex with 3-(1-(5-bromo-4-(4-(trifluoromethyl)phenyl)oxazol-2-yl)ethoxy)-2,6-difluorobenzamide (compound 2)

Ferrer-Gonzalez, E., Fujita, J., Yoshizawa, T., Nelson, J.M., Pilch, A.J., Hillman, E., Ozawa, M., Kuroda, N., Parhi, A.K., LaVoie, E.J., Matsumura, H., Pilch, D.S.

(2019) Sci Rep 9: 20092-20092

Released	2020-01-15
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Staphylococcus aureus
Macromolecule	Cell division protein FtsZ (protein)
Unique Ligands	CA, GDP, ZI1

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6KVQ \| pdb_00006kvq	Download File View File

S. aureus FtsZ in complex with BOFP (compound 3)

Ferrer-Gonzalez, E., Fujita, J., Yoshizawa, T., Nelson, J.M., Pilch, A.J., Hillman, E., Ozawa, M., Kuroda, N., Parhi, A.K., LaVoie, E.J., Matsumura, H., Pilch, D.S.

(2019) Sci Rep 9: 20092-20092

Released	2020-01-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Staphylococcus aureus
Macromolecule	Cell division protein FtsZ (protein)
Unique Ligands	CA, DVX, GDP

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6LL5 \| pdb_00006ll5	Download File View File

Crystal structure of KpFtsZ (residues 11-316)

Yoshizawa, T., Fujita, J., Terakado, H., Ozawa, M., Kuroda, N., Tanaka, S., Uehara, R., Matsumura, H.

(2020) Acta Crystallogr F Struct Biol Commun 76: 86-93

Released	2020-02-26
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Cell division protein FtsZ (protein)
Unique Ligands	GDP, GOL

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6LL6 \| pdb_00006ll6	Download File View File

Crsyal structure of EcFtsZ (residues 11-316)

Yoshizawa, T., Fujita, J., Terakada, H., Ozawa, M., Kuroda, N., Tanaka, S., Uehara, R., Matsumura, H.

(2020) Acta Crystallogr F Struct Biol Commun 76: 86-93

Released	2020-02-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Cell division protein FtsZ (protein)
Unique Ligands	GDP

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7VPY \| pdb_00007vpy	Download File View File

Crystal structure of the neutralizing nanobody P86 against SARS-CoV-2

Maeda, R., Fujita, J., Konishi, Y., Kazuma, Y., Yamazaki, H., Anzai, I., Yamaguchi, K., Kasai, K., Nagata, K., Yamaoka, Y., Miyakawa, K., Ryo, A., Shirakawa, K., Makino, F., Matsuura, Y., Inoue, T., Imura, A., Namba, K., Takaori-Kondo, A.

(2022) Commun Biol 5: 669-669

Released	2022-07-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Vicugna pacos
Macromolecule	Nanobody (protein)
Unique Ligands	EDO, SO4

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7VQ0 \| pdb_00007vq0	Download File View File

Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P86

(2022) Commun Biol 5: 669-669

Released	2022-07-20
Method	ELECTRON MICROSCOPY 3.03 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Vicugna pacos
Macromolecule	Neutralizing nanobody P86 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, MAN, NAG

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8GZV \| pdb_00008gzv	Download File View File

Klebsiella pneumoniae FtsZ complexed with monobody (P212121)

Matsumura, H., Yoshizawa, T., Fujita, J., Tanaka, S., Amesaka, H.

(2023) Nat Commun 14: 4073-4073

Released	2023-07-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Klebsiella pneumoniae
Macromolecule	Cell division protein FtsZ (protein) Monobody (protein)
Unique Ligands	GDP

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8GZW \| pdb_00008gzw	Download File View File

Klebsiella pneumoniae FtsZ complexed with monobody (P21)

Matsumura, H., Yoshizawa, T., Fujita, J., Tanaka, S., Amesaka, H.

(2023) Nat Commun 14: 4073-4073

Released	2023-07-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Klebsiella pneumoniae
Macromolecule	Cell division protein FtsZ (protein) Monobody (protein)
Unique Ligands	GDP

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8GZX \| pdb_00008gzx	Download File View File

Escherichia coli FtsZ complexed with monobody (P212121)

Matsumura, H., Yoshizawa, T., Fujita, J., Tanaka, S., Amesaka, H.

(2023) Nat Commun 14: 4073-4073

Released	2023-07-19
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Cell division protein FtsZ (protein) Monobody (protein)
Unique Ligands	GDP

1 to 25 of 31 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1UOH | pdb_00001uoh

3WQT | pdb_00003wqt

3WQU | pdb_00003wqu

5H5G | pdb_00005h5g

5H5H | pdb_00005h5h

5H5I | pdb_00005h5i

5XDT | pdb_00005xdt

5XDU | pdb_00005xdu

5XDV | pdb_00005xdv

5XDW | pdb_00005xdw

5XNC | pdb_00005xnc

5XNF | pdb_00005xnf

5XNH | pdb_00005xnh

6J26 | pdb_00006j26

6J27 | pdb_00006j27

6J28 | pdb_00006j28

6KVP | pdb_00006kvp

6KVQ | pdb_00006kvq

6LL5 | pdb_00006ll5

6LL6 | pdb_00006ll6

7VPY | pdb_00007vpy

7VQ0 | pdb_00007vq0

8GZV | pdb_00008gzv

8GZW | pdb_00008gzw

8GZX | pdb_00008gzx