RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Fisher, B.E."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Homo sapiens (10)
	Henipavirus nipahense (8)
	Mus musculus (7)
	Human herpesvirus 4 strain B95-8 (4)
	Macaca fascicularis (4)
	Influenza A virus (A/Indiana/10/2011(H3N2)) (2)
	human gammaherpesvirus 4 (2)
	Henipavirus hendraense (1)
	Influenza A virus (1)
	Influenza A virus (A/Solomon Islands/3/2006(H1N1)) (1)

More...

Taxonomy

	Eukaryota (22)
	Riboviria (14)
	Duplodnaviria (6)

Experimental Method

	ELECTRON MICROSCOPY (14)
	X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (26)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (7)
	2.5 - 3.0 (7)
	3.0 - 3.5 (7)
	3.5 - 4.0 (3)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (25)

Enzyme Classification Name

Hydrolases (3)

Symmetry Type

	Asymmetric (14)
	Cyclic (12)

SCOP Classification

All beta proteins (1)

AllSelected

1 to 25 of 26 Structures

Page 1 of 2

Sort by

Explore in 3D

5TR8 \| pdb_00005tr8	Download File View File

Crystal structure of vaccine-elicited pan- influenza H1N1 neutralizing murine antibody 441D6.

Joyce, M.G., Kanekiyo, M., Mascola, J.R., Graham, B.S., Kwong, P.D.

(2019) Nat Immunol 20: 362-372

Released	2018-05-09
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Mus musculus
Macromolecule	441D6 Fab Heavy chain (protein) 441D6 Fab Light chain (protein)
Unique Ligands	NI

Explore in 3D

6XSK \| pdb_00006xsk	Download File View File

Cryo-EM Structure of Vaccine-Elicited Rhesus Antibody 789-203-3C12 in Complex with Stabilized SI06 (A/Solomon Islands/3/06) Influenza Hemagglutinin Trimer

Cerutti, G., Gorman, J., Kwong, P.D., Shapiro, L.

(2022) Immunity 55: 2405-2418.e7

Released	2021-07-21
Method	ELECTRON MICROSCOPY 3.85 Å
Organisms	Influenza A virus (A/Solomon Islands/3/2006(H1N1)) Macaca mulatta
Macromolecule	789-203-3C12 Fab Heavy Chain (protein) 789-203-3C12 Fab Light Chain (protein) Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

7S07 \| pdb_00007s07	Download File View File

Crystal structure of Epstein-Barr virus glycoprotein gH/gL/gp42-peptide in complex with human neutralizing antibodies 769B10 and 769C2

Chen, W.-H., Kanekiyo, M., Cohen, J.I., Joyce, M.G.

(2022) Immunity 55: 2135-2148.e6

Released	2022-11-09
Method	X-RAY DIFFRACTION 3.29 Å
Organisms	Homo sapiens human gammaherpesvirus 4
Macromolecule	Unique protein chains: 7
Unique Ligands	NAG

Explore in 3D

7S08 \| pdb_00007s08	Download File View File

Crystal structure of Epstein-Barr virus gH/gL targeting antibody 770F7

Chen, W.-H., Joyce, M.G.

(2022) Immunity 55: 2135-2148.e6

Released	2022-11-09
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Homo sapiens
Macromolecule	770F7 Fab Heavy chain (protein) 770F7 Fab Light chain (protein)
Unique Ligands	GOL

Explore in 3D

7S0J \| pdb_00007s0j	Download File View File

Crystal structure of Epstein-Barr virus gH/gL targeting antibody 769B10

Chen, W.-H., Kanekiyo, M., Cohen, J.I., Joyce, M.G.

(2022) Immunity 55: 2135-2148.e6

Released	2022-11-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	769B10 Fab Heavy chain (protein) 769B10 Fab Light chain (protein)
Unique Ligands	GOL

Explore in 3D

7S1B \| pdb_00007s1b	Download File View File

Crystal structure of Epstein-Barr virus glycoproteins gH/gL/gp42-peptide in complex with human neutralizing antibodies 769C2 and 770F7

Chen, W.-H., Cohen, J.I., Kanekiyo, M., Joyce, M.G.

(2022) Immunity 55: 2135-2148.e6

Released	2022-11-09
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Homo sapiens human gammaherpesvirus 4
Macromolecule	Unique protein chains: 7
Unique Ligands	NAG

Explore in 3D

7UOP \| pdb_00007uop	Download File View File

Prefusion-stabilized Nipah virus fusion protein complexed with Fab 4H3

Byrne, P.O., McLellan, J.S.

(2023) Nat Commun 14: 1494-1494

Released	2023-03-29
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Henipavirus nipahense Mus musculus
Macromolecule	Fab 4H3 heavy chain (protein) Fab 4H3 light chain (protein) Fusion glycoprotein F0 (protein)
Unique Ligands	NAG

Explore in 3D

7UP9 \| pdb_00007up9	Download File View File

Prefusion-stabilized Nipah virus fusion protein complexed with Fab 2D3

Byrne, P.O., McLellan, J.S.

(2023) Nat Commun 14: 1494-1494

Released	2023-03-29
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Henipavirus nipahense Mus musculus
Macromolecule	Fab 2D3 heavy chain (protein) Fab 2D3 light chain (protein) Fusion glycoprotein F0 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7UPA \| pdb_00007upa	Download File View File

Prefusion-stabilized Nipah virus fusion protein complexed with Fab 1H8

Byrne, P.O., McLellan, J.S.

(2023) Nat Commun 14: 1494-1494

Released	2023-03-29
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Henipavirus nipahense Mus musculus
Macromolecule	Fab 1H8 heavy chain (protein) Fab 1H8 light chain (protein) Fusion glycoprotein F0 (protein)
Unique Ligands	NAG

Explore in 3D

7UPB \| pdb_00007upb	Download File View File

Prefusion-stabilized Nipah virus fusion protein complexed with Fab 1H1

Byrne, P.O., McLellan, J.S.

(2023) Nat Commun 14: 1494-1494

Released	2023-03-29
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Henipavirus nipahense Mus musculus
Macromolecule	Fab 1H1 heavy chain (protein) Fab 1H1 light chain (protein) Fusion glycoprotein F0 (protein)
Unique Ligands	NAG

Explore in 3D

7UPD \| pdb_00007upd	Download File View File

Prefusion-stabilized Nipah virus fusion protein complexed with Fab 2B12

Byrne, P.O., McLellan, J.S.

(2023) Nat Commun 14: 1494-1494

Released	2023-03-29
Method	ELECTRON MICROSCOPY 2.4 Å
Organisms	Henipavirus nipahense Mus musculus
Macromolecule	Fab 2B12 heavy chain (protein) Fab 2B12 light chain (protein) Fusion glycoprotein F0 (protein)
Unique Ligands	NAG

Explore in 3D

7UPK \| pdb_00007upk	Download File View File

Prefusion-stabilized Nipah virus fusion protein complexed with Fab 1A9

Byrne, P.O., McLellan, J.S.

(2023) Nat Commun 14: 1494-1494

Released	2023-03-29
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Henipavirus nipahense Mus musculus
Macromolecule	Fab 1A9 heavy chain (protein) Fab 1A9 light chain (protein) Fusion glycoprotein F0 (protein)

Explore in 3D

8DNG \| pdb_00008dng	Download File View File

Prefusion-stabilized Nipah virus fusion protein

Byrne, P.O., Blade, E.G., McLellan, J.S.

(2024) J Virol 98: e0137223-e0137223

Released	2023-07-19
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Henipavirus nipahense
Macromolecule	Fusion glycoprotein F0 (protein)
Unique Ligands	NAG

Explore in 3D

8DNR \| pdb_00008dnr	Download File View File

Prefusion-stabilized Hendra virus fusion protein

Byrne, P.O., Blade, E.G., McLellan, J.S.

(2024) J Virol 98: e0137223-e0137223

Released	2023-07-19
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Henipavirus hendraense
Macromolecule	Fusion glycoprotein F0 (protein)
Unique Ligands	NAG

Explore in 3D

8DO4 \| pdb_00008do4	Download File View File

Prefusion-stabilized Nipah virus fusion protein, dimer of trimers

Byrne, P.O., Blade, E.G., McLellan, J.S.

(2024) J Virol 98: e0137223-e0137223

Released	2023-07-19
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Henipavirus nipahense
Macromolecule	Fusion glycoprotein F0 (protein)

Explore in 3D

8GAT \| pdb_00008gat	Download File View File

Structure of human NDS.1 Fab and 1G01 Fab in complex with influenza virus neuraminidase from A/Indiana/10/2011 (H3N2v), based on consensus cryo-EM map with only Fab 1G01 resolved

Tsybovsky, Y., Lederhofer, J., Kwong, P.D., Kanekiyo, M.

(2024) Immunity 57: 574-586.e7

Released	2024-02-28
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens Influenza A virus (A/Indiana/10/2011(H3N2))
Macromolecule	Fab 1G01, heavy chain (protein) Fab 1G01, light chain (protein) Vasodilator-stimulated phosphoprotein, Neuraminidase chimera (protein)
Unique Ligands	NAG

Explore in 3D

8GAU \| pdb_00008gau	Download File View File

Structure of human NDS.1 Fab and 1G01 Fab in complex with influenza virus neuraminidase from A/Indiana/10/2011 (H3N2v)

Tsybovsky, Y., Lederhofer, J., Kwong, P.D., Kanekiyo, M.

(2024) Immunity 57: 574-586.e7

Released	2024-02-28
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Influenza A virus (A/Indiana/10/2011(H3N2))
Macromolecule	Fab 1G01, heavy chain (protein) Fab 1G01, light chain (protein) Fab NDS.1, heavy chain (protein) Fab NDS.1, light chain (protein) Vasodilator-stimulated phosphoprotein, Neuraminidase chimera (protein)
Unique Ligands	NAG

Explore in 3D

8GAV \| pdb_00008gav	Download File View File

Structure of human NDS.3 Fab in complex with influenza virus neuraminidase from A/Darwin/09/2021 (H3N2)

Tsybovsky, Y., Lederhofer, J., Kwong, P.D., Kanekiyo, M.

(2024) Immunity 57: 574-586.e7

Released	2024-02-28
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	Fab NDS.3, heavy chain (protein) Fab NDS.3, light chain (protein) Neuraminidase (protein)
Unique Ligands	NAG

Explore in 3D

8SEF \| pdb_00008sef	Download File View File

Crystal structure of Cy137C02, a monoclonal antibody isolated from macaques immunized with an Epstein-Barr virus glycoprotein 350 (gp350) nanoparticle vaccine

Joyce, M.G., Jensen, J.L., Chen, W.H., Kanekiyo, M.

(2025) Immunity 58: 295

Released	2024-04-17
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Macaca fascicularis
Macromolecule	Cy137C02 Fab heavy chain (protein) Cy137C02 Fab light chain (protein)
Unique Ligands	GOL, SO4

Explore in 3D

8SGA \| pdb_00008sga	Download File View File

Crystal structure of 770E11, a monoclonal antibody isolated from a human Epstein-Barr virus seropositive donor

Chen, W.H., Jensen, J.L., Joyce, M.G.

(2025) Immunity 58: 295

Released	2024-04-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	770E11 Fab heavy chain (protein) 770E11 Fab light chain (protein)
Unique Ligands	GOL
Unique branched monosaccharides	BMA, NAG

Explore in 3D

8SGG \| pdb_00008sgg	Download File View File

Crystal structure of Cy137D09, a monoclonal antibody isolated from macaques immunized with an Epstein-Barr virus glycoprotein 350 (gp350) nanoparticle vaccine

Joyce, M.G., Jensen, J.L., Chen, W.H., Kanekiyo, M.

(2025) Immunity 58: 295

Released	2024-04-17
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Macaca fascicularis
Macromolecule	Cy137D09 Fab heavy chain (protein) Cy137D09 Fab light chain (protein)
Unique Ligands	GOL

Explore in 3D

8SGN \| pdb_00008sgn	Download File View File

Crystal structure of Epstein-Barr virus glycoprotein 350 (gp350) in complex with Cy651H02, a monoclonal antibody isolated from macaques immunized with a gp350 nanoparticle vaccine

Joyce, M.G., Jensen, J.L., Chen, W.H., Kanekiyo, M.

(2025) Immunity 58: 295

Released	2024-04-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human herpesvirus 4 strain B95-8 Macaca fascicularis
Macromolecule	Cy651H02 Fab heavy chain (protein) Cy651H02 Fab light chain (protein) Envelope glycoprotein gp350 (protein)
Unique Ligands	EDO, NAG, TRS
Unique branched monosaccharides	FUC, NAG

Explore in 3D

8SIC \| pdb_00008sic	Download File View File

Crystal structure of Epstein-Barr virus glycoprotein 350 (gp350) in complex with Cy137C02, a monoclonal antibody isolated from macaques immunized with a gp350 nanoparticle vaccine

Joyce, M.G., Jensen, J.L., Chen, W.H., Kanekiyo, M.

(2025) Immunity 58: 295

Released	2024-04-17
Method	X-RAY DIFFRACTION 2.76 Å
Organisms	Human herpesvirus 4 strain B95-8 Macaca fascicularis
Macromolecule	Cy137C02 Fab heavy chain (protein) Cy137C02 Fab light chain (protein) Envelope glycoprotein gp350 (protein)
Unique Ligands	NAG, ZN

Explore in 3D

8SM0 \| pdb_00008sm0	Download File View File

Crystal structure of human complement receptor 2 (CD21) in complex with Epstein-Barr virus major glycoprotein gp350

Chen, W.-H., Bu, W., Cohen, J.I., Kanekiyo, M., Joyce, M.G.

(2025) Immunity 58: 295

Released	2024-05-01
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Homo sapiens Human herpesvirus 4 strain B95-8
Macromolecule	Complement receptor type 2 (protein) Envelope glycoprotein gp350 (protein)
Unique Ligands	NAG, SO4

Explore in 3D

8SM1 \| pdb_00008sm1	Download File View File

CRYSTAL STRUCTURE OF HUMAN ANTIBODY 769A9 IN COMPLEX WITH EPSTEIN-BARR VIRUS MAJOR GLYCOPROTEIN GP350

Chen, W.-H., Bu, W., Cohen, J.I., Kanekiyo, M., Joyce, M.G.

(2025) Immunity 58: 295

Released	2024-05-01
Method	X-RAY DIFFRACTION 3.29 Å
Organisms	Homo sapiens Human herpesvirus 4 strain B95-8
Macromolecule	769A9 Fab heavy chain (protein) 769A9 Fab light chain (protein) Envelope glycoprotein gp350 (protein)
Unique Ligands	GOL, NAG

1 to 25 of 26 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5TR8 | pdb_00005tr8

6XSK | pdb_00006xsk

7S07 | pdb_00007s07

7S08 | pdb_00007s08

7S0J | pdb_00007s0j

7S1B | pdb_00007s1b

7UOP | pdb_00007uop

7UP9 | pdb_00007up9

7UPA | pdb_00007upa

7UPB | pdb_00007upb

7UPD | pdb_00007upd

7UPK | pdb_00007upk

8DNG | pdb_00008dng

8DNR | pdb_00008dnr

8DO4 | pdb_00008do4

8GAT | pdb_00008gat

8GAU | pdb_00008gau

8GAV | pdb_00008gav

8SEF | pdb_00008sef

8SGA | pdb_00008sga

8SGG | pdb_00008sgg

8SGN | pdb_00008sgn

8SIC | pdb_00008sic

8SM0 | pdb_00008sm0

8SM1 | pdb_00008sm1