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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Walker, J.R."

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Search Summary

This query matches 261 Structures.

Refinements

Structure Determination Methodology

experimental (261)

Scientific Name of Source Organism

	Homo sapiens (205)
	Toxoplasma gondii (11)
	synthetic construct (10)
	Plasmodium falciparum 3D7 (7)
	Leishmania donovani BPK282A1 (5)
	Cryptosporidium parvum Iowa II (4)
	Plasmodium vivax Sal-1 (4)
	Pseudomonas aeruginosa (3)
	Crotalus atrox (2)
	Cryptosporidium parvum (2)

More...

Taxonomy

	Eukaryota (249)
	Bacteria (10)
	other sequences (10)
	Archaea (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

X-RAY DIFFRACTION (261)

Polymer Entity Type

	Protein (261)
	DNA (9)

Refinement Resolution (Å)

	1.0 - 1.5 (14)
	1.5 - 2.0 (100)
	2.0 - 2.5 (108)
	2.5 - 3.0 (34)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (15)
	2005 - 2009 (122)
	2010 - 2014 (52)
	2015 - 2019 (72)

Enzyme Classification Name

	Transferases (134)
	Hydrolases (38)
	Ligases (46)
	Isomerases (12)
	Lyases (6)
	Oxidoreductases (3)

Membrane Protein Annotation

OPM (4)

Symmetry Type

	Asymmetric (205)
	Cyclic (63)
	Dihedral (18)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (74)
	Artifacts (50)
	All beta proteins (41)
	Alpha and beta proteins (a/b) (24)
	All alpha proteins (13)
	Coiled coil proteins (1)
	Small proteins (2)

AllSelected

1 to 25 of 261 Structures

Page 1 of 11

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1JEQ \| pdb_00001jeq	Download File View File

Crystal Structure of the Ku Heterodimer

Walker, J.R., Corpina, R.A., Goldberg, J.

(2001) Nature 412: 607-614

Released	2001-08-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	KU70 (protein) KU80 (protein)

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1JEY \| pdb_00001jey	Download File View File

Crystal Structure of the Ku heterodimer bound to DNA

Walker, J.R., Corpina, R.A., Goldberg, J.

(2001) Nature 412: 607-614

Released	2001-08-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Ku70 (protein) Ku80 (protein) DNA (34-MER) (nucleic acid) DNA (5'-D(GPTPTPTPTPTPAPGPTPTPTPAPTPTPGPGPGPCPGPCP*G)-3') (nucleic acid)

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1JZN \| pdb_00001jzn	Download File View File

crystal structure of a galactose-specific C-type lectin

Walker, J.R., Nagar, B., Young, N.M., Hirama, T., Rini, J.M.

(2004) Biochemistry 43: 3783-3792

Released	2003-07-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Crotalus atrox
Macromolecule	Galactose-specific lectin (protein)
Unique Ligands	CA, CL, NA
Unique branched monosaccharides	BGC, GAL

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1MUQ \| pdb_00001muq	Download File View File

X-ray Crystal Structure of Rattlesnake Venom Complexed With Thiodigalactoside

Walker, J.R., Nagar, B., Young, N.M., Hirama, T., Rini, J.M.

(2004) Biochemistry 43: 3783-3792

Released	2003-07-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Crotalus atrox
Macromolecule	Galactose-specific lectin (protein)
Unique Ligands	CA, GAL, NA
Unique branched monosaccharides	GAL, YIO

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1T2A \| pdb_00001t2a	Download File View File

Crystal structure of human GDP-D-mannose 4,6-dehydratase

Walker, J.R., Vedadi, M., Sharma, S., Houston, S., Wasney, G., Loppnau, P., Sundstrom, M., Arrowsmith, C., Edwards, A., Oppermann, U.

To be published

Released	2004-05-10
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	GDP-mannose 4,6 dehydratase (protein)
Unique Ligands	GDP, NDP

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1TD5 \| pdb_00001td5	Download File View File

Crystal Structure of the Ligand Binding Domain of E. coli IclR.

Walker, J.R., Evdokimova, L., Zhang, R.-G., Bochkarev, A., Joachimiak, A., Arrowsmith, C., Edwards, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2004-07-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Acetate operon repressor (protein)

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1TF1 \| pdb_00001tf1	Download File View File

Crystal Structure of the E. coli Glyoxylate Regulatory Protein Ligand Binding Domain

Walker, J.R., Skarina, T., Kudrytska, M., Joachimiak, A., Arrowsmith, C., Edwards, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

(2006) J Mol Biology 358: 810-828

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	Negative regulator of allantoin and glyoxylate utilization operons (protein)

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1TJN \| pdb_00001tjn	Download File View File

Crystal structure of hypothetical protein af0721 from Archaeoglobus fulgidus

Yin, J., Xu, X.L., Cuff, M., Walker, J.R., Edwards, A., Savchenko, A., James, M.N.G., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Sirohydrochlorin cobaltochelatase (protein)

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1TXJ \| pdb_00001txj	Download File View File

Crystal structure of translationally controlled tumour-associated protein (TCTP) from Plasmodium knowlesi

Walker, J.R., Vedadi, M., Sharma, S., Houston, S., Lew, J., Amani, M., Wasney, G., Skarina, T., Bray, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Hui, R., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2004-07-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Plasmodium knowlesi
Macromolecule	translationally controlled tumour-associated protein (TCTP) from Plasmodium knowlesi, PKN_PFE0545c (protein)

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1U2X \| pdb_00001u2x	Download File View File

Crystal Structure of a Hypothetical ADP-dependent Phosphofructokinase from Pyrococcus horikoshii OT3

Wong, A.H.Y., Jia, Z., Skarina, T., Walker, J.R., Arrowsmith, C., Joachimiak, A., Edwards, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

(2009) J Biological Chem 284: 22664-22671

Released	2004-09-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii
Macromolecule	ADP-specific phosphofructokinase (protein)
Unique Ligands	SO4

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1X7V \| pdb_00001x7v	Download File View File

Crystal structure of PA3566 from Pseudomonas aeruginosa

Sanders, D.A., Walker, J.R., Skarina, T., Gorodichtchenskaia, E., Joachimiak, A., Edwards, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

(2005) Proteins 61: 209-212

Released	2004-08-31
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	PA3566 protein (protein)
Unique Ligands	SO4

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1X92 \| pdb_00001x92	Download File View File

CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA PHOSPHOHEPTOSE ISOMERASE IN COMPLEX WITH REACTION PRODUCT D-GLYCERO-D-MANNOPYRANOSE-7-PHOSPHATE

Walker, J.R., Evdokimova, E., Kudritska, M., Joachimiak, A., Edwards, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

(2008) J Biological Chem 283: 2835-2845

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	PHOSPHOHEPTOSE ISOMERASE (protein)
Unique Ligands	M7P

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1XEB \| pdb_00001xeb	Download File View File

Crystal Structure of an Acyl-CoA N-acyltransferase from Pseudomonas aeruginosa

Bertero, M.G., Walker, J.R., Skarina, T., Gorodichtchenskaia, E., Joachimiak, A., Edwards, A.E., Savchenko, A., Strynadka, N., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	hypothetical protein PA0115 (protein)

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1XG5 \| pdb_00001xg5	Download File View File

Structure of human putative dehydrogenase MGC4172 in complex with NADP

Kavanagh, K., Ng, S., Sharma, S., Vedadi, M., von Delft, F., Walker, J.R., dhe Paganon, S., Bray, J., Oppermann, U., Edwards, A., Arrowsmith, C., Sundstrom, M., Structural Genomics Consortium (SGC)

To be published

Released	2004-10-05
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Homo sapiens
Macromolecule	ARPG836 (protein)
Unique Ligands	ACY, NAP

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1XSV \| pdb_00001xsv	Download File View File

X-ray crystal structure of conserved hypothetical UPF0122 protein SAV1236 from Staphylococcus aureus subsp. aureus Mu50

Walker, J.R., Xu, X., Virag, C., McDonald, M.-L., Houston, S., Buzadzija, K., Vedadi, M., Dharamsi, A., Fiebig, K.M., Savchenko, A.

To be published

Released	2004-10-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Staphylococcus aureus
Macromolecule	Hypothetical UPF0122 protein SAV1236 (protein)

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1Y6L \| pdb_00001y6l	Download File View File

Human ubiquitin conjugating enzyme E2E2

Walker, J.R., Avvakumov, G.V., Newman, E.M., Mackenzie, F., Kozieradzki, I., Bochkarev, A., Sundstrom, M., Arrowsmith, C., Edwards, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-01-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2E2 (protein)

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1YH2 \| pdb_00001yh2	Download File View File

Ubiquitin-Conjugating Enzyme HSPC150

Walker, J.R., Avvakumov, G.V., Newman, E.M., Mackenzie, F., Kozieradzki, I., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-02-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	HSPC150 protein similar to ubiquitin-conjugating enzyme (protein)

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1YOX \| pdb_00001yox	Download File View File

Structure of the conserved Protein of Unknown Function PA3696 from Pseudomonas aeruginosa

Walker, J.R., Xu, X., Gu, J., Joachimiak, A., Edwards, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	hypothetical protein PA3696 (protein)

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1YQB \| pdb_00001yqb	Download File View File

Human Ubiquilin 3

Walker, J.R., Xue, S., Avvakumov, G.V., Newman, E.M., Mackenzie, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

To be published

Released	2005-02-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Ubiquilin 3 (protein)

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1YRV \| pdb_00001yrv	Download File View File

Novel Ubiquitin-Conjugating Enzyme

Walker, J.R., Choe, J., Avvakumov, G.V., Newman, E.M., MacKenzie, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Homo sapiens
Macromolecule	ubiquitin-conjugating ligase MGC351130 (protein)

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1Z6G \| pdb_00001z6g	Download File View File

Crystal structure of guanylate kinase from Plasmodium falciparum

Mulichak, A.M., Lew, J., Artz, J., Choe, J., Walker, J.R., Zhao, Y., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Hui, R., Gao, M., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	guanylate kinase (protein)
Unique Ligands	EPE, SO4

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1Z6U \| pdb_00001z6u	Download File View File

Np95-like ring finger protein isoform b [Homo sapiens]

Walker, J.R., Avvakumov, G.V., Xue, S., Newman, E.M., Mackenzie, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

To be published

Released	2005-05-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Np95-like ring finger protein isoform b (protein)
Unique Ligands	ZN

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1Z7D \| pdb_00001z7d	Download File View File

Ornithine aminotransferase PY00104 from Plasmodium Yoelii

Walker, J.R., Alam, Z., Amani, M., Lew, J., Wasney, G., Boulanger, K., Weigelt, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Hui, R., Vedadi, M., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2005-07-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Plasmodium yoelii yoelii
Macromolecule	ornithine aminotransferase (protein)

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1ZDN \| pdb_00001zdn	Download File View File

Ubiquitin-conjugating enzyme E2S

Walker, J.R., Avvakumov, G.V., Xue, S., Newman, E.M., Mackenzie, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-05-03
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2S (protein)
Unique Ligands	NA

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1ZIV \| pdb_00001ziv	Download File View File

Catalytic Domain of Human Calpain-9

Walker, J.R., Davis, T., Newman, E.M., Mackenzie, F., Dong, A., Choe, J., Arrowsmith, C., Sundstrom, M., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2007) J Mol Biology 366: 216-229

Released	2005-07-05
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Calpain 9 (protein)
Unique Ligands	BME, CA

1 to 25 of 261 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1JEQ | pdb_00001jeq

1JEY | pdb_00001jey

1JZN | pdb_00001jzn

1MUQ | pdb_00001muq

1T2A | pdb_00001t2a

1TD5 | pdb_00001td5

1TF1 | pdb_00001tf1

1TJN | pdb_00001tjn

1TXJ | pdb_00001txj

1U2X | pdb_00001u2x

1X7V | pdb_00001x7v

1X92 | pdb_00001x92

1XEB | pdb_00001xeb

1XG5 | pdb_00001xg5

1XSV | pdb_00001xsv

1Y6L | pdb_00001y6l

1YH2 | pdb_00001yh2

1YOX | pdb_00001yox

1YQB | pdb_00001yqb

1YRV | pdb_00001yrv

1Z6G | pdb_00001z6g

1Z6U | pdb_00001z6u

1Z7D | pdb_00001z7d

1ZDN | pdb_00001zdn

1ZIV | pdb_00001ziv