RCSB PDB: Search

1QTO \| pdb_00001qto	Download File View File

1.5 A CRYSTAL STRUCTURE OF A BLEOMYCIN RESISTANCE DETERMINANT FROM BLEOMYCIN-PRODUCING STREPTOMYCES VERTICILLUS

Kawano, Y., Kumagai, T., Muta, K., Matoba, Y., Davies, J., Sugiyama, M.

(2000) J Mol Biology 295: 915-925

Released	2000-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces verticillus
Macromolecule	BLEOMYCIN-BINDING PROTEIN (protein)

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1WN0 \| pdb_00001wn0	Download File View File

Crystal Structure of Histidine-containing Phosphotransfer Protein, ZmHP2, from maize

Sugawara, H., Kawano, Y., Hatakeyama, T., Yamaya, T., Kamiya, N., Sakakibara, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Protein Sci 14: 202-208

Released	2005-01-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Zea mays
Macromolecule	histidine-containing phosphotransfer protein (protein)

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2CWT \| pdb_00002cwt	Download File View File

Catalytic base deletion in copper amine oxidase from arthrobacter globiformis

Chiu, Y.C., Okajima, T., Murakawa, T., Uchida, M., Taki, M., Hirota, S., Kim, M., Yamaguchi, H., Kawano, Y., Kamiya, N., Kuroda, S., Hayashi, H., Yamamoto, Y., Tanizawa, K.

(2006) Biochemistry 45: 4105-4120

Released	2006-05-02
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Arthrobacter globiformis
Macromolecule	Phenylethylamine oxidase (protein)
Unique Ligands	CU

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2CWU \| pdb_00002cwu	Download File View File

Substrate schiff-base intermediate of copper amine oxidase from arthrobacter globiformis

Chiu, Y.C., Okajima, T., Murakawa, T., Uchida, M., Taki, M., Hirota, S., Kim, M., Yamaguchi, H., Kawano, Y., Kamiya, N., Kuroda, S., Hayashi, H., Yamamoto, Y., Tanizawa, K.

(2006) Biochemistry 45: 4105-4120

Released	2006-05-02
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Arthrobacter globiformis
Macromolecule	Phenylethylamine oxidase (protein)
Unique Ligands	CU

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2CWV \| pdb_00002cwv	Download File View File

Product schiff-base intermediate of copper amine oxidase from arthrobacter globiformis

Chiu, Y.C., Okajima, T., Murakawa, T., Uchida, M., Taki, M., Hirota, S., Kim, M., Yamaguchi, H., Kawano, Y., Kamiya, N., Kuroda, S., Hayashi, H., Yamamoto, Y., Tanizawa, K.

(2006) Biochemistry 45: 4105-4120

Released	2006-05-02
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Arthrobacter globiformis
Macromolecule	Phenylethylamine oxidase (protein)
Unique Ligands	CU

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2CYZ \| pdb_00002cyz	Download File View File

photo-activation state of Fe-type NHase in anaerobic condition

Kawano, Y., Hashimoto, K., Odaka, M., Nakayama, H., Takio, K., Endo, I., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-09
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit alpha (protein) Nitrile hydratase subunit beta (protein)
Unique Ligands	FE, MG

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2CZ0 \| pdb_00002cz0	Download File View File

photo-activation state of Fe-type NHase in aerobic condition

Kawano, Y., Hashimoto, K., Odaka, M., Nakayama, H., Takio, K., Endo, I., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit alpha (protein) Nitrile hydratase subunit beta (protein)
Unique Ligands	BUA, FE

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2CZ1 \| pdb_00002cz1	Download File View File

photo-activation state of Fe-type NHase with n-BA in anaerobic condition

Kawano, Y., Hashimoto, K., Odaka, M., Nakayama, H., Takio, K., Endo, I., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-09
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit alpha (protein) Nitrile hydratase subunit beta (protein)
Unique Ligands	BUA, FE, MG

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2CZ6 \| pdb_00002cz6	Download File View File

Complex of Inactive Fe-type NHase with Cyclohexyl isocyanide

Nojiri, M., Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-11
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit alpha (protein) Nitrile hydratase subunit beta (protein)
Unique Ligands	CYI, FE, MG, NO

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2CZ7 \| pdb_00002cz7	Download File View File

Fe-type NHase photo-activated for 75min at 105K

Nojiri, M., Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit alpha (protein) Nitrile hydratase subunit beta (protein)
Unique Ligands	FE, MG, NO

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2D0Q \| pdb_00002d0q	Download File View File

Complex of Fe-type NHase with Cyclohexyl isocyanide, photo-activated for 1hr at 277K

Nojiri, M., Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-02-05
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit alpha (protein) Nitrile hydratase subunit beta (protein)
Unique Ligands	CYI, FE, MG

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2DD4 \| pdb_00002dd4	Download File View File

Thiocyanate hydrolase (SCNase) from Thiobacillus thioparus recombinant apo-enzyme

Arakawa, T., Kawano, Y., Kataoka, S., Katayama, Y., Kamiya, N., Yohda, M., Odaka, M.

(2007) J Mol Biology 366: 1497-1509

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Thiobacillus thioparus
Macromolecule	Thiocyanate hydrolase alpha subunit (protein) Thiocyanate hydrolase beta subunit (protein) Thiocyanate hydrolase gamma subunit (protein)
Unique Ligands	FRU, TLA

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2DD5 \| pdb_00002dd5	Download File View File

Thiocyanate hydrolase (SCNase) from Thiobacillus thioparus native holo-enzyme

Arakawa, T., Kawano, Y., Kataoka, S., Katayama, Y., Kamiya, N., Yohda, M., Odaka, M.

(2007) J Mol Biology 366: 1497-1509

Released	2007-01-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thiobacillus thioparus
Macromolecule	Thiocyanate hydrolase alpha subunit (protein) Thiocyanate hydrolase beta subunit (protein) Thiocyanate hydrolase gamma subunit (protein)
Unique Ligands	3CO, SO4

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2DXB \| pdb_00002dxb	Download File View File

Recombinant thiocyanate hydrolase comprising partially-modified cobalt centers

Arakawa, T., Kawano, Y., Katayama, Y., Yohda, M., Odaka, M.

(2009) J Am Chem Soc 131: 14838-14843

Released	2007-08-28
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Thiobacillus thioparus
Macromolecule	Thiocyanate hydrolase subunit alpha (protein) Thiocyanate hydrolase subunit beta (protein) Thiocyanate hydrolase subunit gamma (protein)
Unique Ligands	3CO, PO4

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2DXC \| pdb_00002dxc	Download File View File

Recombinant thiocyanate hydrolase, fully-matured form

Arakawa, T., Kawano, Y., Katayama, Y., Yohda, M., Odaka, M.

(2009) J Am Chem Soc 131: 14838-14843

Released	2007-08-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thiobacillus thioparus
Macromolecule	Thiocyanate hydrolase subunit alpha (protein) Thiocyanate hydrolase subunit beta (protein) Thiocyanate hydrolase subunit gamma (protein)
Unique Ligands	3CO, TLA

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2YW3 \| pdb_00002yw3	Download File View File

Crystal Structure Analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase from TTHB1

Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-23
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Thermus thermophilus HB8
Macromolecule	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase (protein)
Unique Ligands	PO4

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2YW4 \| pdb_00002yw4	Download File View File

Crystal Structure Analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase from TTHB1

Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-23
Method	X-RAY DIFFRACTION 2.53 Å
Organisms	Thermus thermophilus HB8
Macromolecule	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase (protein)

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2Z1Q \| pdb_00002z1q	Download File View File

Crystal structure of acyl CoA dehydrogenase

Hikima, T., Kawano, Y., Nodake, Y., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-05-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Acyl-CoA dehydrogenase (protein)
Unique Ligands	FAD

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2ZCF \| pdb_00002zcf	Download File View File

Mutational study on Alpha-Gln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771

Takarada, H., Kawano, Y., Hashimoto, K., Nakayama, H., Ueda, S., Yohda, M., Kamiya, N., Dohmae, N., Maeda, M., Odaka, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2006) Biosci Biotechnol Biochem 70: 881-889

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit alpha (protein) Nitrile hydratase subunit beta (protein)
Unique Ligands	FE, MG

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2ZZD \| pdb_00002zzd	Download File View File

Recombinant thiocyanate hydrolase, air-oxidized form of holo-enzyme

Arakawa, T., Kawano, Y., Katayama, Y., Yohda, M., Odaka, M.

(2009) J Am Chem Soc 131: 14838-14843

Released	2009-10-13
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Thiobacillus thioparus
Macromolecule	Thiocyanate hydrolase subunit alpha (protein) Thiocyanate hydrolase subunit beta (protein) Thiocyanate hydrolase subunit gamma (protein)
Unique Ligands	3CO, BGC, FRU, TLA

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3X3X \| pdb_00003x3x	Download File View File

Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine

Okajima, T., Nakanishi, S., Murakawa, T., Kataoka, M., Hayashi, H., Hamaguchi, A., Nakai, T., Kawano, Y., Yamaguchi, H., Tanizawa, K.

(2015) J Biological Chem 290: 23094-23109

Released	2015-08-19
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Arthrobacter globiformis
Macromolecule	Phenylethylamine oxidase (protein)
Unique Ligands	CU, GOL, NA, PEL

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3X3Y \| pdb_00003x3y	Download File View File

Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by histamine

Okajima, T., Nakanishi, S., Murakawa, T., Kataoka, M., Hayashi, H., Hamaguchi, A., Nakai, T., Kawano, Y., Yamaguchi, H., Tanizawa, K.

(2015) J Biological Chem 290: 23094-23109

Released	2015-08-19
Method	X-RAY DIFFRACTION 1.499 Å
Organisms	Arthrobacter globiformis
Macromolecule	Phenylethylamine oxidase (protein)
Unique Ligands	CU, GOL, K, NA

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3X3Z \| pdb_00003x3z	Download File View File

Copper amine oxidase from Arthrobacter globiformis: Aminoresorcinol form produced by anaerobic reduction with ethylamine hydrochloride

Okajima, T., Nakanishi, S., Murakawa, T., Kataoka, M., Hayashi, H., Hamaguchi, A., Nakai, T., Kawano, Y., Yamaguchi, H., Tanizawa, K.

(2015) J Biological Chem 290: 23094-23109

Released	2015-08-19
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Arthrobacter globiformis
Macromolecule	Phenylethylamine oxidase (protein)
Unique Ligands	CL, CU, GOL, K, NA

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3X40 \| pdb_00003x40	Download File View File

Copper amine oxidase from Arthrobacter globiformis: Product Schiff-base form produced by anaerobic reduction in the presence of sodium chloride

Okajima, T., Nakanishi, S., Murakawa, T., Kataoka, M., Hayashi, H., Hamaguchi, A., Nakai, T., Kawano, Y., Yamaguchi, H., Tanizawa, K.

(2015) J Biological Chem 290: 23094-23109

Released	2015-08-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Arthrobacter globiformis
Macromolecule	Phenylethylamine oxidase (protein)
Unique Ligands	CL, CU, GOL, NA

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3X41 \| pdb_00003x41	Download File View File

Copper amine oxidase from Arthrobacter globiformis: Product Schiff-base form produced by anaerobic reduction in the presence of sodium bromide

Okajima, T., Nakanishi, S., Murakawa, T., Kataoka, M., Hayashi, H., Hamaguchi, A., Nakai, T., Kawano, Y., Yamaguchi, H., Tanizawa, K.

(2015) J Biological Chem 290: 23094-23109

Released	2015-08-19
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Arthrobacter globiformis
Macromolecule	Phenylethylamine oxidase (protein)
Unique Ligands	BR, CU, GOL, K, NA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1QTO | pdb_00001qto

1WN0 | pdb_00001wn0

2CWT | pdb_00002cwt

2CWU | pdb_00002cwu

2CWV | pdb_00002cwv

2CYZ | pdb_00002cyz

2CZ0 | pdb_00002cz0

2CZ1 | pdb_00002cz1

2CZ6 | pdb_00002cz6

2CZ7 | pdb_00002cz7

2D0Q | pdb_00002d0q

2DD4 | pdb_00002dd4

2DD5 | pdb_00002dd5

2DXB | pdb_00002dxb

2DXC | pdb_00002dxc

2YW3 | pdb_00002yw3

2YW4 | pdb_00002yw4

2Z1Q | pdb_00002z1q

2ZCF | pdb_00002zcf

2ZZD | pdb_00002zzd

3X3X | pdb_00003x3x

3X3Y | pdb_00003x3y

3X3Z | pdb_00003x3z

3X40 | pdb_00003x40

3X41 | pdb_00003x41