Download Mendeleyphoto-activation state of Fe-type NHase in anaerobic condition
Kawano, Y., Hashimoto, K., Odaka, M., Nakayama, H., Takio, K., Endo, I., Kamiya, N.To be published.
2CYZ | pdb_00002cyz
photo-activation state of Fe-type NHase in anaerobic condition
- PDB DOI: https://doi.org/10.2210/pdb2CYZ/pdb
- Classification: LYASE
- Organism(s): Rhodococcus erythropolis
- Mutation(s): Yes
- Deposited: 2005-07-09 Released: 2006-01-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.193 (Depositor)
- R-Value Work: 0.149 (Depositor)
- R-Value Observed: 0.149 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nitrile hydratase subunit alpha | 206 | Rhodococcus erythropolis | Mutation(s): 2 EC: 4.2.1.84 |  | |
UniProt | |||||
Find proteins for P13448 (Rhodococcus erythropolis) Explore P13448 Go to UniProtKB: P13448 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13448 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nitrile hydratase subunit beta | 212 | Rhodococcus erythropolis | Mutation(s): 0 EC: 4.2.1.84 |  | |
UniProt | |||||
Find proteins for P13449 (Rhodococcus erythropolis) Explore P13449 Go to UniProtKB: P13449 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13449 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FE Query on FE | C [auth A] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
| MG Query on MG | D [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSD Query on CSD | A | L-PEPTIDE LINKING | C3 H7 N O4 S |  | CYS |
| CSO Query on CSO | A | L-PEPTIDE LINKING | C3 H7 N O3 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.193 (Depositor)
- R-Value Work: 0.149 (Depositor)
- R-Value Observed: 0.149 (Depositor)
Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 115.052 | α = 90 |
| b = 60.587 | β = 124.96 |
| c = 82.007 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELX | model building |
| SHELXL-97 | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2006-01-09 Deposition Author(s): Kawano, Y., Hashimoto, K., Odaka, M., Nakayama, H., Takio, K., Endo, I., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2006-01-09
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary
