6FBT
The X-ray Structure of Lytic Transglycosylase Slt from Pseudomonas aeruginosa in complex with the reaction product NAG-anhNAMpentapeptide
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SLT_L | e6fbtA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: SLT_L | ECOD (1.6) |
A | SLT | e6fbtA1 | A: a+b complex topology | X: Lysozyme-like (From Homology) | H: Lysozyme-like | T: Lysozyme-like | F: SLT | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14718 | Soluble lytic murein transglycosylase L domain (SLT_L) | Soluble lytic murein transglycosylase L domain | - | Repeat | |
PF01464 | Transglycosylase SLT domain (SLT) | Transglycosylase SLT domain | This family is distantly related to Pfam:PF00062. Members are found in phages, type II, type III and type IV secretion systems (reviewed in [4]). | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
B [auth E] | NAG-anhNAMpentapeptide | - | - | - |
Probable soluble lytic transglycosylase | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037061 | Lytic transglycosylase, superhelical linker domain superfamily | Homologous Superfamily | |
IPR008939 | Lytic transglycosylase, superhelical U-shaped | Homologous Superfamily | |
IPR012289 | Lytic transglycosylase, superhelical linker | Domain | |
IPR023346 | Lysozyme-like domain superfamily | Homologous Superfamily | |
IPR008258 | Transglycosylase SLT domain 1 | Domain |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
B [auth E] | API | Parent Component: LYS |
B [auth E] | DAL | AA0111 , AA0191 : meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 | :
B [auth E] | DGL | AA0111 , AA0191 | :