Download MendeleyCrystal structure of apaG from Vibrio cholerae
Chang, C., Joachimiak, A., Li, H., Moy, S., Midwest Center for Structural Genomics (MCSG)To be published.
1XVS | pdb_00001xvs
Crystal structure of apaG Protein from Vibrio cholerae
- PDB DOI: https://doi.org/10.2210/pdb1XVS/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Vibrio cholerae
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2004-10-28 Released: 2004-12-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.01 Å
- R-Value Free: 0.266 (Depositor), 0.270 (DCC)
- R-Value Work: 0.180 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.184 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein apaG | 126 | Vibrio cholerae | Mutation(s): 4 Gene Names: apaG |  | |
UniProt | |||||
Find proteins for Q9KUS3 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KUS3 Go to UniProtKB: Q9KUS3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9KUS3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.01 Å
- R-Value Free: 0.266 (Depositor), 0.270 (DCC)
- R-Value Work: 0.180 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.184 (Depositor)
Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.138 | α = 90 |
| b = 67.998 | β = 131.43 |
| c = 64.002 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2004-12-14 Deposition Author(s): Chang, C., Joachimiak, A., Li, H., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2004-12-14
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.3: 2023-08-23
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.4: 2023-11-15
Changes: Data collection - Version 1.5: 2024-10-09
Changes: Structure summary
