Download MendeleyThe Structure of Gene Product Af1683 from Archaeoglobus Fulgidus
Cuff, M.E., Zhang, R., Ginell, S.L., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
1W8I | pdb_00001w8i
The Structure of gene product af1683 from Archaeoglobus fulgidus.
- PDB DOI: https://doi.org/10.2210/pdb1W8I/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Archaeoglobus fulgidus DSM 4304
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-09-22 Released: 2004-11-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.225 (Depositor), 0.202 (DCC)
- R-Value Work: 0.211 (Depositor), 0.203 (DCC)
- R-Value Observed: 0.212 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PUTATIVE VAPC RIBONUCLEASE AF_1683 | 156 | Archaeoglobus fulgidus DSM 4304 | Mutation(s): 0 EC: 3.1 |  | |
UniProt | |||||
Find proteins for O28590 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O28590 Go to UniProtKB: O28590 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O28590 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.225 (Depositor), 0.202 (DCC)
- R-Value Work: 0.211 (Depositor), 0.203 (DCC)
- R-Value Observed: 0.212 (Depositor)
Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 66.73 | α = 90 |
| b = 66.73 | β = 90 |
| c = 181.381 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DM | model building |
| HKL-2000 | data reduction |
| HKL-3000 | phasing |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | phasing |
| RESOLVE | phasing |
| ARP/wARP | phasing |
| REFMAC | refinement |
Entry History
Deposition Data
- Released Date: 2004-11-16 Deposition Author(s): Midwest Center for Structural Genomics (MCSG), Cuff, M.E., Zhang, R., Ginell, S.L., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A.
Revision History (Full details and data files)
- Version 1.0: 2004-11-16
Type: Initial release - Version 1.1: 2012-02-22
Changes: Database references, Derived calculations, Non-polymer description, Other, Structure summary, Version format compliance - Version 1.2: 2017-05-24
Changes: Database references - Version 1.3: 2017-06-28
Changes: Refinement description - Version 1.4: 2024-10-23
Changes: Data collection, Database references, Derived calculations, Other, Structure summary
