Download MendeleyCrystal structure of the BRD2-BD2 in complex with a ligand
Kalra, P., Shi, K., Aihara, H., Pomerantz, W.C.K.To be published.
7UU0 | pdb_00007uu0
Crystal structure of the BRD2-BD2 in complex with a ligand
- PDB DOI: https://doi.org/10.2210/pdb7UU0/pdb
- Classification: TRANSCRIPTION
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-04-28 Released: 2023-05-03
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Library of Medicine (NIH/NLM)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.170 (Depositor), 0.170 (DCC)
- R-Value Work: 0.140 (Depositor), 0.150 (DCC)
- R-Value Observed: 0.142 (Depositor)
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Isoform 3 of Bromodomain-containing protein 2 | 135 | Homo sapiens | Mutation(s): 0 Gene Names: BRD2, KIAA9001, RING3 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P25440 (Homo sapiens) Explore P25440 Go to UniProtKB: P25440 | |||||
PHAROS: P25440 GTEx: ENSG00000204256 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P25440 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| QJ1 Query on QJ1 | C [auth A] | methyl (7S)-7-(thiophen-2-yl)-1,4-thiazepane-4-carboxylate C11 H15 N O2 S2 GTUMUZDXWXZZSA-JTQLQIEISA-N |  | ||
| EDO Query on EDO | B [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.170 (Depositor), 0.170 (DCC)
- R-Value Work: 0.140 (Depositor), 0.150 (DCC)
- R-Value Observed: 0.142 (Depositor)
Space Group: P 2 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 32.309 | α = 90 |
| b = 52.526 | β = 90 |
| c = 71.216 | γ = 90 |
| Software Name | Purpose |
|---|---|
| Aimless | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-05-03 Deposition Author(s): Kalra, P., Shi, K., Aihara, H., Pomerantz, W.C.K.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM118047 |
| National Institutes of Health/National Library of Medicine (NIH/NLM) | United States | 5T32GM008347-23 |
Revision History (Full details and data files)
- Version 1.0: 2023-05-03
Type: Initial release - Version 1.1: 2024-05-22
Changes: Data collection
