Download Mendeleyfortuitous crystallization of GAP-DH impurity from a solution of human liver FBPase
Ruf, A., Benz, J., Rudolph, M.G.To be published.
5O0V
crystal structure of E. coli GAP-DH by fortuitous crystallization as an impurity from a solution of human liver FBPase
- PDB DOI: https://doi.org/10.2210/pdb5O0V/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Escherichia coli
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-05-17 Released: 2017-07-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.189
- R-Value Work: 0.154
- R-Value Observed: 0.156
wwPDB Validation 3D Report Full Report
This is version 2.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glyceraldehyde-3-phosphate dehydrogenase A | 330 | Escherichia coli | Mutation(s): 0 Gene Names: gapA, b1779, JW1768 EC: 1.2.1.12 |  | |
UniProt | |||||
Find proteins for P0A9B2 (Escherichia coli (strain K12)) Explore P0A9B2 Go to UniProtKB: P0A9B2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0A9B2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A], C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.189
- R-Value Work: 0.154
- R-Value Observed: 0.156
- Space Group: I 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 121.384 | α = 90 |
| b = 121.384 | β = 90 |
| c = 157.004 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| DENZO | data reduction |
| SADABS | data scaling |
| COMO | phasing |
Entry History
Deposition Data
- Released Date: 2017-07-12 Deposition Author(s): Ruf, A., Benz, J., Rudolph, M.G.
Revision History (Full details and data files)
- Version 1.0: 2017-07-12
Type: Initial release - Version 2.0: 2017-07-19
Changes: Atomic model, Database references, Derived calculations, Polymer sequence, Source and taxonomy, Structure summary - Version 2.1: 2018-05-23
Changes: Data collection, Database references, Source and taxonomy - Version 2.2: 2024-05-08
Changes: Data collection, Database references
