Download MendeleyCrystal structure of transcriptional regulator from Cytophaga hutchinsonii ATCC 33406
Nocek, B., Maltseva, N., Tan, K., Abdullah, J., Stols, L., Eschenfeldt, W., Joachimiak, A.To be published.
3F0C
Crystal structure of transcriptional regulator from Cytophaga hutchinsonii ATCC 33406
- PDB DOI: https://doi.org/10.2210/pdb3F0C/pdb
- Classification: transcription regulator
- Organism(s): Cytophaga hutchinsonii ATCC 33406
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-10-24 Released: 2008-11-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.96 Å
- R-Value Free: 0.271
- R-Value Work: 0.209
- R-Value Observed: 0.210
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcriptional regulator | 216 | Cytophaga hutchinsonii ATCC 33406 | Mutation(s): 0 Gene Names: ycdC, CHU_0940 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.96 Å
- R-Value Free: 0.271
- R-Value Work: 0.209
- R-Value Observed: 0.210
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 116.099 | α = 90 |
| b = 116.099 | β = 90 |
| c = 46.367 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| SHELX | model building |
| Coot | model building |
| MLPHARE | phasing |
| DM | model building |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SHELX | phasing |
| DM | phasing |
Entry History
Deposition Data
- Released Date: 2008-11-11 Deposition Author(s): Nocek, B., Maltseva, N., Tan, K., Abdullah, J., Eschenfeldt, W., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-11-11
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Source and taxonomy, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2023-12-27
Changes: Data collection, Database references, Derived calculations - Version 1.4: 2024-10-09
Changes: Structure summary
