Download MendeleyCrystal structure of an uncharacterized protein
Malashkevich, V.N., Toro, R., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3F5Q | pdb_00003f5q
CRYSTAL STRUCTURE OF putative short chain dehydrogenase from Escherichia coli CFT073
- PDB DOI: https://doi.org/10.2210/pdb3F5Q/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Escherichia coli O6
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-11-04 Released: 2009-01-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.215 (Depositor), 0.230 (DCC)
- R-Value Work: 0.171 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.173 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| dehydrogenase | 262 | Escherichia coli O6 | Mutation(s): 0 Gene Names: AAN80202.1, c1736, yciK EC: 1 |  | |
UniProt | |||||
Find proteins for A0A0H2V6Y9 (Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)) Explore A0A0H2V6Y9 Go to UniProtKB: A0A0H2V6Y9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H2V6Y9 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.215 (Depositor), 0.230 (DCC)
- R-Value Work: 0.171 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.173 (Depositor)
Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 40.412 | α = 100.29 |
| b = 48.011 | β = 102.67 |
| c = 65.232 | γ = 105.26 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SHELX | phasing |
| RESOLVE | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2009-01-13 Deposition Author(s): Malashkevich, V.N., Toro, R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-01-13
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2018-11-14
Changes: Data collection, Structure summary - Version 1.4: 2021-02-10
Changes: Database references, Structure summary - Version 1.5: 2023-12-27
Changes: Data collection, Database references
