Download MendeleySulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
Royer, S.F., Crennell, S.J., Angelopolou, M., Hough, D.W., Danson, M.J., Bull, S.D.To be published.
2YDA
Sulfolobus sulfataricus 2-keto-3-deoxygluconate aldolase Y103F,Y130F, A198F variant
- PDB DOI: https://doi.org/10.2210/pdb2YDA/pdb
- Classification: LYASE
- Organism(s): Saccharolobus solfataricus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2011-03-18 Released: 2012-03-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.91 Å
- R-Value Free: 0.210
- R-Value Work: 0.172
- R-Value Observed: 0.174
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2-KETO-3-DEOXY GLUCONATE ALDOLASE | 294 | Saccharolobus solfataricus | Mutation(s): 3 EC: 4.1.2.20 (PDB Primary Data), 4.1.2.55 (UniProt) |  | |
UniProt | |||||
Find proteins for O54288 (Saccharolobus solfataricus) Explore O54288 Go to UniProtKB: O54288 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O54288 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | E [auth A] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | C [auth A], D [auth A], F [auth B], G [auth B], H [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| IPA Query on IPA | I [auth B], J [auth B] | ISOPROPYL ALCOHOL C3 H8 O KFZMGEQAYNKOFK-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.91 Å
- R-Value Free: 0.210
- R-Value Work: 0.172
- R-Value Observed: 0.174
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 99.62 | α = 90 |
| b = 99.62 | β = 90 |
| c = 249.01 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| BALBES | phasing |
Entry History
Deposition Data
- Released Date: 2012-03-28 Deposition Author(s): Crennell, S.J., Royer, S.F., Angelopoulou, M., Hough, D.W., Danson, M.J., Bull, S.D.
Revision History (Full details and data files)
- Version 1.0: 2012-03-28
Type: Initial release - Version 1.1: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description - Version 1.2: 2024-11-13
Changes: Structure summary
