Download MendeleyCrystal Structure of a Hypothetical Protein JW0805 at High pH from Escherichia coli
Ihsanawati, Murayama, K., Bessho, Y., Shirouzu, M., Yokoyama, S.To be published.
2DBN | pdb_00002dbn
Crystal Structure of a Hypothetical Protein JW0805 at High pH from Escherichia coli
- PDB DOI: https://doi.org/10.2210/pdb2DBN/pdb
- Classification: Structural genomics, unknown function
- Organism(s): Escherichia coli
- Mutation(s): No
- Deposited: 2005-12-15 Released: 2006-06-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.200 (Depositor), 0.200 (DCC)
- R-Value Work: 0.187 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.187 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein ybiU | 461 | Escherichia coli | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P75791 (Escherichia coli (strain K12)) Explore P75791 Go to UniProtKB: P75791 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P75791 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A], D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.200 (Depositor), 0.200 (DCC)
- R-Value Work: 0.187 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.187 (Depositor)
Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.688 | α = 90 |
| b = 69.688 | β = 90 |
| c = 174.649 | γ = 120 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2006-06-15 Deposition Author(s): Ihsanawati, Murayama, K., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2006-06-15
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2024-03-13
Changes: Data collection, Database references, Derived calculations
