Download MendeleyCrystal structure of Hypothetical protein AF0614, putative nucleotidyltransferase
Chang, C., Joachimiak, A., Skarina, T., Edwards, A., Savchenko, A.To be published.
1YLQ | pdb_00001ylq
Crystal structure of putative nucleotidyltransferase
- PDB DOI: https://doi.org/10.2210/pdb1YLQ/pdb
- Classification: TRANSFERASE
- Organism(s): Archaeoglobus fulgidus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2005-01-19 Released: 2005-03-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.02 Å
- R-Value Free: 0.267 (Depositor), 0.270 (DCC)
- R-Value Work: 0.217 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.217 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| putative nucleotidyltransferase, hypothetical protein AF0614 | 96 | Archaeoglobus fulgidus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for O29641 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O29641 Go to UniProtKB: O29641 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O29641 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.02 Å
- R-Value Free: 0.267 (Depositor), 0.270 (DCC)
- R-Value Work: 0.217 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.217 (Depositor)
Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 38.35 | α = 90 |
| b = 38.35 | β = 90 |
| c = 244.082 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2005-03-01 Deposition Author(s): Chang, C., Joachimiak, A., Skarina, T., Savchenko, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2005-03-01
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance - Version 1.3: 2024-02-14
Changes: Data collection, Database references, Derived calculations
