RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Keywords HAS EXACT PHRASE "TOXIN"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 2,356 Structures.

Refinements

Structure Determination Methodology

experimental (2,356)

Scientific Name of Source Organism

	Homo sapiens (141)
	Clostridium botulinum (124)
	Staphylococcus aureus (97)
	Escherichia coli (79)
	Vibrio cholerae (55)
	synthetic construct (47)
	Clostridium perfringens (45)
	Clostridioides difficile (44)
	Olivierus martensii (40)
	Bacillus anthracis (38)

More...

Taxonomy

	Bacteria (1,337)
	Eukaryota (1,055)
	Eukaryota (eukaryotes) (98)
	other sequences (47)
	Duplodnaviria (22)
	unclassified bacterial viruses (6)
	Riboviria (5)
	unclassified sequences (5)
	Riboviria (RNA viruses and viroids) (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (1,562)
	SOLUTION NMR (621)
	ELECTRON MICROSCOPY (170)
	SOLID-STATE NMR (3)
	SOLUTION SCATTERING (2)

Polymer Entity Type

	Protein (2,356)
	DNA (15)
	RNA (11)

Refinement Resolution (Å)

	0.5 - 1.0 (13)
	1.0 - 1.5 (138)
	1.5 - 2.0 (477)
	2.0 - 2.5 (493)
	2.5 - 3.0 (344)
	3.0 - 3.5 (161)
	3.5 - 4.0 (65)
	4.0 - 4.5 (25)
	> 4.5 (16)

Release Date

	1980 - 1984 (1)
	1985 - 1989 (1)
	1990 - 1994 (28)
	1995 - 1999 (99)
	2000 - 2004 (312)
	2005 - 2009 (307)
	2010 - 2014 (396)
	2015 - 2019 (491)
	2020 - 2024 (682)
	2025 - 2029 (39)

Enzyme Classification Name

	Hydrolases (396)
	Transferases (120)
	Lyases (25)
	Ligases (7)
	Isomerases (4)
	Oxidoreductases (4)

Membrane Protein Annotation

	OPM (227)
	mpstruc (101)
	PDBTM (52)
	MemProtMD (31)

Symmetry Type

	Asymmetric (1,781)
	Cyclic (593)
	Dihedral (60)
	Helical (3)

SCOP Classification

	All beta proteins (349)
	Alpha and beta proteins (a+b) (304)
	Small proteins (345)
	Artifacts (148)
	Membrane and cell surface proteins and peptides (106)
	All alpha proteins (111)
	Alpha and beta proteins (a/b) (50)
	Peptides (44)
	Coiled coil proteins (15)
	Multi-domain proteins (alpha and beta) (11)

More...

AllSelected

1 to 25 of 2,356 Structures

Page 1 of 95

Sort by

Explore in 3D

1ABT \| pdb_00001abt	Download File View File

NMR SOLUTION STRUCTURE OF AN ALPHA-BUNGAROTOXIN(SLASH)NICOTINIC RECEPTOR PEPTIDE COMPLEX

Basus, V.J., Song, G., Hawrot, E.

(1993) Biochemistry 32: 12290-12298

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Bungarus multicinctus Tetronarce californica
Macromolecule	ALPHA-BUNGAROTOXIN (protein) NICOTINIC RECEPTOR PEPTIDE (protein)

Explore in 3D

1ACC \| pdb_00001acc	Download File View File

ANTHRAX PROTECTIVE ANTIGEN

Petosa, C., Liddington, R.C.

(1997) Nature 385: 833-838

Released	1998-02-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus anthracis
Macromolecule	ANTHRAX PROTECTIVE ANTIGEN (protein)
Unique Ligands	CA

Explore in 3D

1ACW \| pdb_00001acw	Download File View File

SOLUTION NMR STRUCTURE OF P01, A NATURAL SCORPION PEPTIDE STRUCTURALLY ANALOGOUS TO SCORPION TOXINS SPECIFIC FOR APAMIN-SENSITIVE POTASSIUM CHANNEL, 25 STRUCTURES

Blanc, E., Fremont, V., Sizun, P., Meunier, S., Van Rietschoten, J., Thevand, A., Bernassau, J.M., Darbon, H.

(1996) Proteins 24: 359-369

Released	1997-04-01
Method	SOLUTION NMR
Organisms	Androctonus mauritanicus mauritanicus
Macromolecule	NATURAL SCORPION PEPTIDE P01 (protein)

Explore in 3D

1ANS \| pdb_00001ans	Download File View File

THREE-DIMENSIONAL STRUCTURE IN SOLUTION OF NEUROTOXIN III FROM THE SEA ANEMONE ANEMONIA SULCATA

Manoleras, N., Norton, R.S.

(1994) Biochemistry 33: 11051-11061

Released	1994-08-31
Method	SOLUTION NMR
Organisms	Anemonia sulcata
Macromolecule	NEUROTOXIN III (protein)

Explore in 3D

1AW7 \| pdb_00001aw7	Download File View File

Q136A MUTANT OF TOXIC SHOCK SYNDROME TOXIN-1 FROM S. AUREUS

Earhart, C.A., Mitchell, D.T., Murray, D.L., Pinheiro, D.M., Matsumura, M., Schlievert, P.M., Ohlendorf, D.H.

(1998) Biochemistry 37: 7194-7202

Released	1998-10-28
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Staphylococcus aureus
Macromolecule	TOXIC SHOCK SYNDROME TOXIN-1 (protein)

Explore in 3D

1AY3 \| pdb_00001ay3	Download File View File

Nodularin from Nodularia spumigena

Annila, A.J.

(1996) J Biological Chem 271: 16695-16702

Released	1999-08-16
Method	SOLUTION NMR
Organisms	Nodularia spumigena BY1
Macromolecule	PEPTIDIC TOXIN NODULARIN (protein)

Explore in 3D

1B1Z \| pdb_00001b1z	Download File View File

STREPTOCOCCAL PYROGENIC EXOTOXIN A1

Papageorgiou, A.C., Acharya, K.R.

(1999) EMBO J 18: 9-21

Released	1999-11-24
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Streptococcus pyogenes
Macromolecule	PROTEIN (TOXIN) (protein)

Explore in 3D

1B3C \| pdb_00001b3c	Download File View File

SOLUTION STRUCTURE OF A BETA-NEUROTOXIN FROM THE NEW WORLD SCORPION CENTRUROIDES SCULPTURATUS EWING

Jablonsky, M.J., Jackson, P.L., Trent, J.O., Watt, D.D., Krishna, N.R.

(1999) Biochem Biophys Res Commun 254: 406-412

Released	1998-12-16
Method	SOLUTION NMR
Organisms	Centruroides sculpturatus
Macromolecule	PROTEIN (NEUROTOXIN CSE-I) (protein)

Explore in 3D

1B44 \| pdb_00001b44	Download File View File

CRYSTAL STRUCTURE OF THE B SUBUNIT OF HEAT-LABILE ENTEROTOXIN FROM E. COLI CARRYING A PEPTIDE WITH ANTI-HSV ACTIVITY

Matkovic-Calogovic, D., Loregian, A., D'Acunto, M.R., Battistutta, R., Tossi, A., Palu, G., Zanotti, G.

(1999) J Biological Chem 274: 8764-8769

Released	1999-01-13
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (B-POL SUBUNIT OF HEAT-LABILE ENTEROTOXIN) (protein)

Explore in 3D

1B45 \| pdb_00001b45	Download File View File

ALPHA-CNIA CONOTOXIN FROM CONUS CONSORS, NMR, 43 STRUCTURES

Favreau, P., Krimm, I., Le Gall, F., Bobenrieth, M.J., Lamthanh, H., Bouet, F., Servent, D., Molgo, J., Menez, A., Letourneux, Y., Lancelin, J.M.

(1999) Biochemistry 38: 6317-6326

Released	1999-07-09
Method	SOLUTION NMR
Organisms	Conus consors
Macromolecule	ALPHA-CNIA (protein)

Explore in 3D

1B7D \| pdb_00001b7d	Download File View File

NEUROTOXIN (TS1) FROM BRAZILIAN SCORPION TITYUS SERRULATUS

Polikarpov, I., Sanches Jr., M.S., Marangoni, S., Toyama, M.H., Teplyakov, A.

(1999) J Mol Biology 290: 175-184

Released	1999-07-22
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Tityus serrulatus
Macromolecule	PROTEIN (NEUROTOXIN TS1) (protein)
Unique Ligands	PO4

Explore in 3D

1B8W \| pdb_00001b8w	Download File View File

DEFENSIN-LIKE PEPTIDE 1

Torres, A.M., Wang, X., Fletcher, J.I., Alewood, D., Alewood, P.F., Smith, R., Simpson, R.J., Nicholson, G.M., Sutherland, S.K., Gallagher, C.H., King, G.F., Kuchel, P.W.

(1999) Biochem J 341: 785-794

Released	1999-09-15
Method	SOLUTION NMR
Organisms	Ornithorhynchus anatinus
Macromolecule	PROTEIN (DEFENSIN-LIKE PEPTIDE 1) (protein)

Explore in 3D

1BAH \| pdb_00001bah	Download File View File

A TWO DISULFIDE DERIVATIVE OF CHARYBDOTOXIN WITH DISULFIDE 13-33 REPLACED BY TWO ALPHA-AMINOBUTYRIC ACIDS, NMR, 30 STRUCTURES

Song, J., Gilquin, B., Jamin, N., Guenneugues, M., Dauplais, M., Vita, C., Menez, A.

(1997) Biochemistry 36: 3760-3766

Released	1997-01-11
Method	SOLUTION NMR
Organisms	Leiurus quinquestriatus
Macromolecule	CHARYBDOTOXIN (protein)

Explore in 3D

1BCP \| pdb_00001bcp	Download File View File

BINARY COMPLEX OF PERTUSSIS TOXIN AND ATP

Hazes, B., Read, R.J.

(1996) J Mol Biology 258: 661-671

Released	1997-06-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bordetella pertussis
Macromolecule	PERTUSSIS TOXIN (protein)
Unique Ligands	ATP

Explore in 3D

1BH1 \| pdb_00001bh1	Download File View File

STRUCTURAL STUDIES OF D-PRO MELITTIN, NMR, 20 STRUCTURES

Barnham, K.J., Hewish, D., Werkmeister, J., Curtain, C., Kirkpatrick, A., Bartone, N., Liu, S.T., Norton, R., Rivett, D.

(2002) J Protein Chem 21: 243-253

Released	1999-01-06
Method	SOLUTION NMR
Organisms	Apis mellifera
Macromolecule	MELITTIN (protein)

Explore in 3D

1BMR \| pdb_00001bmr	Download File View File

ALPHA-LIKE TOXIN LQH III FROM SCORPION LEIURUS QUINQUESTRIATUS HEBRAEUS, NMR, 25 STRUCTURES

Krimm, I., Gilles, N., Sautiere, P., Stankiewicz, M., Pelhate, M., Gordon, D., Lancelin, J.-M.

(1999) J Mol Biology 285: 1749-1763

Released	1999-02-16
Method	SOLUTION NMR
Organisms	Leiurus hebraeus
Macromolecule	LQH III ALPHA-LIKE TOXIN (protein)

Explore in 3D

1BOS \| pdb_00001bos	Download File View File

SHIGA-LIKE TOXIN COMPLEXED WITH ITS RECEPTOR

Ling, H., Boodhoo, A., Hazes, B., Cummings, M.D., Armstrong, G.D., Brunton, J.L., Read, R.J.

(1998) Biochemistry 37: 1777-1788

Released	1999-02-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Enterobacteria phage H-19B Phage h30
Macromolecule	SHIGA-LIKE TOXIN I B SUBUNIT (protein)
Unique Ligands	GAL
Unique branched monosaccharides	BGC, GAL, GLA

Explore in 3D

1BUD \| pdb_00001bud	Download File View File

ACUTOLYSIN A FROM SNAKE VENOM OF AGKISTRODON ACUTUS AT PH 5.0

Gong, W., Zhu, X., Liu, S., Teng, M., Niu, L.

(1998) J Mol Biology 283: 657-668

Released	1999-09-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Deinagkistrodon acutus
Macromolecule	PROTEIN (ACUTOLYSIN A) (protein)
Unique Ligands	CA, ZN

Explore in 3D

1BUN \| pdb_00001bun	Download File View File

STRUCTURE OF BETA2-BUNGAROTOXIN: POTASSIUM CHANNEL BINDING BY KUNITZ MODULES AND TARGETED PHOSPHOLIPASE ACTION

Kwong, P.D., Mcdonald, N.Q., Sigler, P.B., Hendrickson, W.A.

(1995) Structure 3: 1109-1119

Released	1996-04-03
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Bungarus multicinctus
Macromolecule	BETA2-BUNGAROTOXIN (protein)
Unique Ligands	NA

Explore in 3D

1C2U \| pdb_00001c2u	Download File View File

SOLUTION STRUCTURE OF [ABU3,35]SHK12-28,17-32

Pennington, M.W., Lanigan, M.D., Kalman, K., Manhir, V.M., Rauer, H., McVaugh, C.T., Behm, D., Donaldson, D., Chandy, K.G., Kem, W.R., Norton, R.S.

(1999) Biochemistry 38: 14549-14558

Released	1999-11-10
Method	SOLUTION NMR
Organisms	Stichodactyla helianthus
Macromolecule	SYNTHETIC PEPTIDE ANALOGUE OF SHK TOXIN (protein)

Explore in 3D

1C48 \| pdb_00001c48	Download File View File

MUTATED SHIGA-LIKE TOXIN B SUBUNIT (G62T)

Ling, H., Bast, D., Brunton, J.L., Read, R.J.

To be published

Released	2000-08-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Phage h30
Macromolecule	PROTEIN (SHIGA-LIKE TOXIN I B SUBUNIT) (protein)

Explore in 3D

1C49 \| pdb_00001c49	Download File View File

STRUCTURAL AND FUNCTIONAL DIFFERENCES OF TWO TOXINS FROM THE SCORPION PANDINUS IMPERATOR

Klenk, K.C., Tenenholz, T.C., Matteson, D.R., Rogowski, R.S., Blaustein, M.P., Weber, D.J.

(2000) Proteins 38: 441-449

Released	2000-03-22
Method	SOLUTION NMR
Organisms	Pandinus imperator
Macromolecule	TOXIN K-BETA (protein)

Explore in 3D

1C4Q \| pdb_00001c4q	Download File View File

MUTATED SHIGA-LIKE TOXIN B SUBUNIT (F30A/W34A) COMPLEXED WITH RECEPTOR GB3 ANALOGUE

Ling, H., Brunton, J.L., Read, R.J.

To be published

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (SHIGA-LIKE TOXIN I SUBUNIT B) (protein)
Unique branched monosaccharides	BGC, GAL, GLA