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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Pyrococcus horikoshii OT3"

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Search Summary

This query matches 474 Structures.

Refinements

Structure Determination Methodology

experimental (474)

Scientific Name of Source Organism

	Pyrococcus horikoshii OT3 (474)
	Pseudomonas aeruginosa PAO1 (5)
	Homo sapiens (2)
	Aequorea victoria (1)
	Agrobacterium fabrum str. C58 (1)
	Saccharomyces cerevisiae S288C (1)

Taxonomy

	Archaea (474)
	Bacteria (6)
	Eukaryota (4)

Experimental Method

	X-RAY DIFFRACTION (460)
	ELECTRON MICROSCOPY (9)
	SOLUTION NMR (7)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (474)
	RNA (8)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (16)
	1.5 - 2.0 (130)
	2.0 - 2.5 (197)
	2.5 - 3.0 (76)
	3.0 - 3.5 (25)
	3.5 - 4.0 (15)
	4.0 - 4.5 (8)
	> 4.5 (2)

Release Date

	2000 - 2004 (26)
	2005 - 2009 (233)
	2010 - 2014 (88)
	2015 - 2019 (79)
	2020 - 2024 (45)
	2025 - 2029 (3)

Enzyme Classification Name

	Transferases (155)
	Hydrolases (70)
	Ligases (58)
	Oxidoreductases (18)
	Isomerases (19)
	Lyases (17)
	Translocases (12)

Membrane Protein Annotation

	MemProtMD (23)
	PDBTM (23)
	mpstruc (16)
	OPM (14)

Symmetry Type

	Cyclic (271)
	Asymmetric (157)
	Dihedral (69)
	Tetrahedral (9)

SCOP Classification

	Alpha and beta proteins (a/b) (164)
	Alpha and beta proteins (a+b) (91)
	All beta proteins (32)
	All alpha proteins (18)
	Artifacts (8)
	Multi-domain proteins (alpha and beta) (2)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 474 Structures

Page 1 of 19

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1DJU \| pdb_00001dju	Download File View File

CRYSTAL STRUCTURE OF AROMATIC AMINOTRANSFERASE FROM PYROCOCCUS HORIKOSHII OT3

Matsui, I., Matsui, E., Sakai, Y., Kikuchi, H., Kawarabayashi, H.

(2000) J Biological Chem 275: 4871-4879

Released	2001-04-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	AROMATIC AMINOTRANSFERASE (protein)
Unique Ligands	PLP

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1ION \| pdb_00001ion	Download File View File

THE SEPTUM SITE-DETERMINING PROTEIN MIND COMPLEXED WITH MG-ADP FROM PYROCOCCUS HORIKOSHII OT3

Sakai, N., Yao, M., Itou, H., Watanabe, N., Yumoto, F., Tanokura, M., Tanaka, I.

(2001) Structure 9: 817-826

Released	2001-09-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	PROBABLE CELL DIVISION INHIBITOR MIND (protein)
Unique Ligands	ADP, MG

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1IU9 \| pdb_00001iu9	Download File View File

Crystal structure of the C-terminal domain of aspartate racemase from Pyrococcus horikoshii OT3

Liu, L., Iwata, K., Yohda, M., Miki, K.

(2002) FEBS Lett 528: 114-118

Released	2003-09-09
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	aspartate racemase (protein)
Unique Ligands	CA

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1IZ6 \| pdb_00001iz6	Download File View File

Crystal Structure of Translation Initiation Factor 5A from Pyrococcus Horikoshii

Yao, M., Ohsawa, A., Kikukawa, S., Tanaka, I., Kimura, M.

(2003) J Biochem 133: 75-81

Released	2003-01-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Initiation Factor 5A (protein)

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1J0A \| pdb_00001j0a	Download File View File

Crystal Structure Analysis of the ACC deaminase homologue

Fujino, A., Ose, T., Honma, M., Yao, M., Tanaka, I.

(2004) J Mol Biology 341: 999-1013

Released	2003-05-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	1-aminocyclopropane-1-carboxylate deaminase (protein)
Unique Ligands	IPA, PLP, SO4

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1J0B \| pdb_00001j0b	Download File View File

Crystal Structure Analysis of the ACC deaminase homologue complexed with inhibitor

Fujino, A., Ose, T., Honma, M., Yao, M., Tanaka, I.

(2004) J Mol Biology 341: 999-1013

Released	2003-05-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	1-aminocyclopropane-1-carboxylate deaminase (protein)
Unique Ligands	5PA

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1J2V \| pdb_00001j2v	Download File View File

Crystal Structure of CutA1 from Pyrococcus Horikoshii

Tanaka, Y., Sakai, N., Yasutake, Y., Yao, M., Tsumoto, K., Kumagai, I., Tanaka, I.

(2004) FEBS Lett 556: 167-174

Released	2004-01-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	102AA long hypothetical periplasmic divalent cation tolerance protein CUTA (protein)

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1J31 \| pdb_00001j31	Download File View File

Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii

Sakai, N., Tajika, Y., Yao, M., Watanabe, N., Tanaka, I.

(2004) Proteins 57: 869-873

Released	2004-03-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Hypothetical protein PH0642 (protein)
Unique Ligands	ACT

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1JFL \| pdb_00001jfl	Download File View File

CRYSTAL STRUCTURE DETERMINATION OF ASPARTATE RACEMASE FROM AN ARCHAEA

Liu, L.J., Iwata, K., Kita, A., Kawarabayasi, Y., Yohda, M., Miki, K.

(2002) J Mol Biology 319: 479-489

Released	2002-06-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	ASPARTATE RACEMASE (protein)

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1RI7 \| pdb_00001ri7	Download File View File

crystal structure of a protein in the LRP/ASNC family from the hyperthermophilic archaeon Pyrococcus sp. OT3

Koike, H., Suzuki, M.

(2004) Proc Natl Acad Sci U S A 101: 2840-2845

Released	2004-03-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Putative transcriptional regulator (protein)

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1UAX \| pdb_00001uax	Download File View File

Crystal structure of the ribonuclease H2 from Pyrococcus horikoshii OT3

Hata, T., Numata, T., Kakuta, Y., Kimura, M.

To be published

Released	2004-06-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Ribonuclease HII (protein)

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1UB9 \| pdb_00001ub9	Download File View File

Structure of the transcriptional regulator homologue protein from Pyrococcus horikoshii OT3

Okada, U., Sakai, N., Tajika, Y., Yao, M., Watanabe, N., Tanaka, I.

(2006) Proteins 63: 1084-1086

Released	2004-05-04
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Hypothetical protein PH1061 (protein)

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1UDD \| pdb_00001udd	Download File View File

TenA homologue protein from P.horikoshii OT3

Itou, H., Yao, M., Watanabe, N., Tanaka, I.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1094-1100

Released	2004-06-01
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	transcriptional regulator (protein)

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1UKU \| pdb_00001uku	Download File View File

Crystal Structure of Pyrococcus horikoshii CutA1 Complexed with Cu2+

Tanaka, Y., Yasutake, Y., Yao, M., Sakai, N., Tanaka, I., Tsumoto, K., Kumagai, I.

(2004) FEBS Lett 556: 167-174

Released	2004-01-13
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	periplasmic divalent cation tolerance protein CutA (protein)
Unique Ligands	CU

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1ULY \| pdb_00001uly	Download File View File

Crystal structure analysis of the ArsR homologue DNA-binding protein from P. horikoshii OT3

Itou, H., Yao, M., Watanabe, N., Tanaka, I.

(2008) Proteins 70: 1631-1634

Released	2004-10-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	hypothetical protein PH1932 (protein)

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1UMJ \| pdb_00001umj	Download File View File

Crystal structure of Pyrococcus horikoshii CutA in the presence of 3M guanidine hydrochloride

Tanaka, Y., Tsumoto, K., Yasutake, Y., Sakai, N., Yao, M., Tanaka, I., Kumagai, I.

(2004) Biochem Biophys Res Commun 323: 185-191

Released	2004-10-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	periplasmic divalent cation tolerance protein CutA (protein)
Unique Ligands	GAI

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1UZ5 \| pdb_00001uz5	Download File View File

The Crystal Structure of molybdopterin biosynthesis moea protein from Pyrococcus horikosii

Takahashi, H., Tahirov, T.H.

To be published

Released	2004-03-10
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	402AA LONG HYPOTHETICAL MOLYBDOPTERIN BIOSYNTHESIS MOEA PROTEIN (protein)
Unique Ligands	SO4

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1V3W \| pdb_00001v3w	Download File View File

Structure of Ferripyochelin binding protein from Pyrococcus horikoshii OT3

Jeyakanthan, J., Tahirov, T.H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Acta Crystallogr D Biol Crystallogr 64: 1012-1019

Released	2003-11-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	ferripyochelin binding protein (protein)
Unique Ligands	CA, CL, EDO, GOL, ZN

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1V67 \| pdb_00001v67	Download File View File

Structure of ferripyochelin binding protein from pyrococcus horikoshii OT3

Jeyakanthan, J., Tahirov, T.H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Acta Crystallogr D Biol Crystallogr 64: 1012-1019

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	ferripyochelin binding protein (protein)
Unique Ligands	BCT, CA, ZN