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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Byrnievirus HK97"

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Byrnievirus HK97 (16)
	Escherichia phage HK97 (3)

Taxonomy

Duplodnaviria (18)

Experimental Method

	X-RAY DIFFRACTION (12)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

	Protein (18)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	2.0 - 2.5 (3)
	3.0 - 3.5 (2)
	3.5 - 4.0 (5)
	4.0 - 4.5 (1)
	> 4.5 (6)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (10)
	2010 - 2014 (1)
	2020 - 2024 (5)

Symmetry Type

	Icosahedral (11)
	Cyclic (4)
	Asymmetric (3)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	Low resolution protein structures (1)

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1 to 18 of 18 Structures

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1IF0 \| pdb_00001if0	Download File View File

PSEUDO-ATOMIC MODEL OF BACTERIOPHAGE HK97 PROCAPSID (PROHEAD II)

Conway, J.F., Wikoff, W.R., Cheng, N., Duda, R.L., Hendrix, R.W., Johnson, J.E., Steven, A.C.

(2001) Science 292: 744-748

Released	2001-05-02
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Byrnievirus HK97
Macromolecule	PROTEIN (MAJOR CAPSID PROTEIN GP5) (protein)

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1OHG \| pdb_00001ohg	Download File View File

STRUCTURE OF THE DSDNA BACTERIOPHAGE HK97 MATURE EMPTY CAPSID

Helgstrand, C., Wikoff, W.R., Duda, R.L., Hendrix, R.W., Johnson, J.E., Liljas, L.

(2003) J Mol Biology 334: 885

Released	2003-12-11
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Byrnievirus HK97
Macromolecule	MAJOR CAPSID PROTEIN (protein)
Unique Ligands	CL, SO4

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2FRP \| pdb_00002frp	Download File View File

Bacteriophage HK97 Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 7.5 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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2FS3 \| pdb_00002fs3	Download File View File

Bacteriophage HK97 K169Y Head I

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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2FSY \| pdb_00002fsy	Download File View File

Bacteriophage HK97 Pepsin-treated Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

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2FT1 \| pdb_00002ft1	Download File View File

Bacteriophage HK97 Head II

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

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2FTE \| pdb_00002fte	Download File View File

Bacteriophage HK97 Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

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2GP1 \| pdb_00002gp1	Download File View File

Bacteriophage HK97 Prohead II crystal structure

Gertsman, I., Gan, L., Johnson, J.E.

To be published

Released	2006-05-02
Method	X-RAY DIFFRACTION 5.2 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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2OB9 \| pdb_00002ob9	Download File View File

Structure of bacteriophage HK97 tail assembly chaperone

McGrath, T.E., Tuite, A., Bona, D., Saridakis, V., Edwards, A.M., Maxwell, K., Chirgadze, N.Y.

(2013) J Mol Biology 425: 2436-2449

Released	2007-12-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Byrnievirus HK97
Macromolecule	Tail assembly chaperone (protein)

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3DDX \| pdb_00003ddx	Download File View File

HK97 bacteriophage capsid Expansion Intermediate-II model

Lee, K.K., Gan, L., Conway, J.F., Hendrix, R.W., Steven, A.C., Johnson, J.E.

(2008) Structure 16: 1491-1502

Released	2008-11-04
Method	ELECTRON MICROSCOPY 14 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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3E8K \| pdb_00003e8k	Download File View File

Crystal structure of HK97 Prohead II

Gertsman, I., Speir, J., Johnson, J.E.

(2009) Nature 458: 646-650

Released	2009-02-17
Method	X-RAY DIFFRACTION 3.65 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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3JVO \| pdb_00003jvo	Download File View File

Crystal structure of bacteriophage HK97 gp6

Lam, R., Tuite, A., Battaile, K.P., Edwards, A.M., Maxwell, K.L., Chirgadze, N.Y.

(2010) J Mol Biology 395: 754-768

Released	2009-11-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Byrnievirus HK97
Macromolecule	Gp6 (protein)
Unique Ligands	CL, MPD

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3QPR \| pdb_00003qpr	Download File View File

HK97 Prohead I encapsidating inactive virally encoded protease

Huang, R.K., Khayat, R., Lee, K.K., Gertsman, I., Duda, R.L., Hendrix, R.W., Johnson, J.E.

(2011) J Mol Biology 408: 541-554

Released	2011-03-30
Method	X-RAY DIFFRACTION 5.2 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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6Z6D \| pdb_00006z6d	Download File View File

Crystal structure of the HK97 bacteriophage large terminase

Fung, H.K.H., Chechik, M., Baumann, C.G., Antson, A.A.

(2022) Nucleic Acids Res 50: 8719-8732

Released	2021-06-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Byrnievirus HK97
Macromolecule	Terminase large subunit (protein)
Unique Ligands	BR

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6Z6E \| pdb_00006z6e	Download File View File

Crystal structure of the HK97 bacteriophage small terminase

Fung, H.K.H., Chechik, M., Baumann, C.G., Antson, A.A.

(2022) Nucleic Acids Res 50: 8719-8732

Released	2021-06-09
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Byrnievirus HK97
Macromolecule	Terminase small subunit (protein)
Unique Ligands	IOD

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8FQK \| pdb_00008fqk	Download File View File

Asymmetric unit of HK97 phage prohead I

Huet, A., Oh, B., Maurer, J., Duda, R.L., Conway, J.F.

(2023) Sci Adv 9: eadg8868-eadg8868

Released	2023-06-28
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Escherichia phage HK97
Macromolecule	Scaffolding domain delta (protein)

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8FQL \| pdb_00008fql	Download File View File

Portal vertex of HK97 phage

Huet, A., Oh, B., Maurer, J., Duda, R.L., Conway, J.F.

(2023) Sci Adv 9: eadg8868-eadg8868

Released	2023-06-28
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Escherichia phage HK97
Macromolecule	Portal protein (protein)

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8POP \| pdb_00008pop	Download File View File

HK97 small terminase in complex with DNA

Chechik, M., Greive, S.J., Antson, A.A., Jenkins, H.T.

(2024) Proc Natl Acad Sci U S A 121: e2406138121-e2406138121

Released	2023-08-09
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Byrnievirus HK97 Escherichia phage HK97
Macromolecule	Terminase small subunit (protein) DNA (31-MER) (nucleic acid)

1 to 18 of 18 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1IF0 | pdb_00001if0

PSEUDO-ATOMIC MODEL OF BACTERIOPHAGE HK97 PROCAPSID (PROHEAD II)

1OHG | pdb_00001ohg

STRUCTURE OF THE DSDNA BACTERIOPHAGE HK97 MATURE EMPTY CAPSID

2FRP | pdb_00002frp

Bacteriophage HK97 Expansion Intermediate IV

2FS3 | pdb_00002fs3

Bacteriophage HK97 K169Y Head I

2FSY | pdb_00002fsy

Bacteriophage HK97 Pepsin-treated Expansion Intermediate IV

2FT1 | pdb_00002ft1

Bacteriophage HK97 Head II

2FTE | pdb_00002fte

Bacteriophage HK97 Expansion Intermediate IV

2GP1 | pdb_00002gp1

Bacteriophage HK97 Prohead II crystal structure

2OB9 | pdb_00002ob9

Structure of bacteriophage HK97 tail assembly chaperone

3DDX | pdb_00003ddx

HK97 bacteriophage capsid Expansion Intermediate-II model

3E8K | pdb_00003e8k

Crystal structure of HK97 Prohead II

3JVO | pdb_00003jvo

Crystal structure of bacteriophage HK97 gp6

3QPR | pdb_00003qpr

HK97 Prohead I encapsidating inactive virally encoded protease

6Z6D | pdb_00006z6d

Crystal structure of the HK97 bacteriophage large terminase

6Z6E | pdb_00006z6e

Crystal structure of the HK97 bacteriophage small terminase

8FQK | pdb_00008fqk

Asymmetric unit of HK97 phage prohead I

8FQL | pdb_00008fql

Portal vertex of HK97 phage

8POP | pdb_00008pop

HK97 small terminase in complex with DNA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

1IF0 | pdb_00001if0

1OHG | pdb_00001ohg

2FRP | pdb_00002frp

2FS3 | pdb_00002fs3

2FSY | pdb_00002fsy

2FT1 | pdb_00002ft1

2FTE | pdb_00002fte

2GP1 | pdb_00002gp1

2OB9 | pdb_00002ob9

3DDX | pdb_00003ddx

3E8K | pdb_00003e8k

3JVO | pdb_00003jvo

3QPR | pdb_00003qpr

6Z6D | pdb_00006z6d

6Z6E | pdb_00006z6e

8FQK | pdb_00008fqk

8FQL | pdb_00008fql

8POP | pdb_00008pop