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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy ID (Full Lineage) = "266"

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Search Summary

This query matches 283 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (283)

Scientific Name of Source Organism

	Paracoccus denitrificans (156)
	Paracoccus denitrificans PD1222 (127)

Taxonomy

Bacteria (283)

Experimental Method

	X-RAY DIFFRACTION (242)
	ELECTRON MICROSCOPY (36)
	SOLUTION NMR (5)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

Protein (283)

Refinement Resolution (Å)

	0.5 - 1.0 (7)
	1.0 - 1.5 (20)
	1.5 - 2.0 (67)
	2.0 - 2.5 (126)
	2.5 - 3.0 (38)
	3.0 - 3.5 (6)
	3.5 - 4.0 (14)

Release Date

	1975 - 1979 (1)
	1990 - 1994 (12)
	1995 - 1999 (23)
	2000 - 2004 (31)
	2005 - 2009 (46)
	2010 - 2014 (99)
	2015 - 2019 (28)
	2020 - 2024 (41)
	2025 - 2029 (2)

Enzyme Classification Name

	Oxidoreductases (132)
	Translocases (42)
	Transferases (14)
	Lyases (3)
	Isomerases (4)
	Hydrolases (3)

Membrane Protein Annotation

	PDBTM (50)
	MemProtMD (36)
	OPM (33)
	mpstruc (8)

Symmetry Type

	Asymmetric (133)
	Cyclic (143)
	Dihedral (13)

SCOP Classification

	All beta proteins (76)
	Small proteins (38)
	Alpha and beta proteins (a/b) (26)
	All alpha proteins (22)
	Artifacts (18)
	Alpha and beta proteins (a+b) (7)
	Membrane and cell surface proteins and peptides (10)

AllSelected

1 to 25 of 283 Polymer Entities

Page 1 of 12

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155C: Entity 1	Download File View File

THE STRUCTURE OF PARACOCCUS DENITRIFICANS CYTOCHROME C550

Timkovich, R.

(1976) J Biological Chem 251: 4033-4046

Released	1976-08-20
Method	X-RAY DIFFRACTION 2.5 Å
Chain ID	A
Organism	Paracoccus denitrificans
Macromolecule	CYTOCHROME C550

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1AAC: Entity 1	Download File View File

AMICYANIN OXIDIZED, 1.31 ANGSTROMS

Cunane, L.M., Chen, Z.-W., Durley, R.C.E., Mathews, F.S.

(1996) Acta Crystallogr D Biol Crystallogr 52: 676-686

Released	1996-03-08
Method	X-RAY DIFFRACTION 1.31 Å
Chain ID	A
Organism	Paracoccus denitrificans
Macromolecule	AMICYANIN

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1AAJ: Entity 1	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF AMICYANIN AND APOAMICYANIN FROM PARACOCCUS DENITRIFICANS AT 2.0 ANGSTROMS AND 1.8 ANGSTROMS RESOLUTION

Durley, R.C.E., Chen, L., Lim, L.W., Mathews, F.S.

(1993) Protein Sci 2: 739-752

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Chain ID	A
Organism	Paracoccus denitrificans
Macromolecule	AMICYANIN

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1AAN: Entity 1	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF AMICYANIN AND APOAMICYANIN FROM PARACOCCUS DENITRIFICANS AT 2.0 ANGSTROMS AND 1.8 ANGSTROMS RESOLUTION

Chen, L., Durley, R.C.E., Lim, L.W., Mathews, F.S.

(1993) Protein Sci 2: 739-752

Released	1993-10-31
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Paracoccus denitrificans
Macromolecule	AMICYANIN

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1AR1: Entity 1	Download File View File

Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans two-subunit Cytochrome C Oxidase Complexed with an Antibody Fv Fragment

Ostermeier, C., Harrenga, A., Ermler, U., Michel, H.

(1997) Proc Natl Acad Sci U S A 94: 10547-10553

Released	1998-02-11
Method	X-RAY DIFFRACTION 2.7 Å
Chain ID	A
Organism	Paracoccus denitrificans
Macromolecule	CYTOCHROME C OXIDASE

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1AR1: Entity 2	Download File View File

Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans two-subunit Cytochrome C Oxidase Complexed with an Antibody Fv Fragment

Ostermeier, C., Harrenga, A., Ermler, U., Michel, H.

(1997) Proc Natl Acad Sci U S A 94: 10547-10553

Released	1998-02-11
Method	X-RAY DIFFRACTION 2.7 Å
Chain ID	B
Organism	Paracoccus denitrificans
Macromolecule	CYTOCHROME C OXIDASE

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1AY4: Entity 1	Download File View File

AROMATIC AMINO ACID AMINOTRANSFERASE WITHOUT SUBSTRATE

Okamoto, A., Hirotsu, K., Kagamiyama, H.

(1998) J Mol Biology 280: 443-461

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.33 Å
Chain IDs	A, B
Organism	Paracoccus denitrificans
Macromolecule	AROMATIC AMINO ACID AMINOTRANSFERASE

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1AY5: Entity 1	Download File View File

AROMATIC AMINO ACID AMINOTRANSFERASE COMPLEX WITH MALEATE

Okamoto, A., Hirotsu, K., Kagamiyama, H.

(1998) J Mol Biology 280: 443-461

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.5 Å
Chain IDs	A, B
Organism	Paracoccus denitrificans
Macromolecule	AROMATIC AMINO ACID AMINOTRANSFERASE

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1AY8: Entity 1	Download File View File

AROMATIC AMINO ACID AMINOTRANSFERASE COMPLEX WITH 3-PHENYLPROPIONATE

Okamoto, A., Hirotsu, K., Kagamiyama, H.

(1998) J Mol Biology 280: 443-461

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, B
Organism	Paracoccus denitrificans
Macromolecule	AROMATIC AMINO ACID AMINOTRANSFERASE

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1BXA: Entity 1	Download File View File

AMICYANIN REDUCED, PH 4.4, 1.3 ANGSTROMS

Cunane, L.M., Chen, Z.W., Durley, R.C.E., Mathews, F.S.

(1998) Biochemistry 37: 17128-17136

Released	1998-10-07
Method	X-RAY DIFFRACTION 1.3 Å
Chain ID	A
Organism	Paracoccus denitrificans
Macromolecule	PROTEIN (AMICYANIN)

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1C7M: Entity 1	Download File View File

SOLUTION STRUCTURE OF THE FUNCTIONAL DOMAIN OF PARACOCCUS DENITRIFICANS CYTOCHROME C552 IN THE REDUCED STATE

Pristovsek, P., Luecke, C., Reincke, B., Ludwig, B., Rueterjans, H.

(2000) Eur J Biochem 267: 4205-4212

Released	2000-07-19
Method	SOLUTION NMR
Chain ID	A
Organism	Paracoccus denitrificans
Macromolecule	PROTEIN (CYTOCHROME C552)

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1COT: Entity 1	Download File View File

X-RAY STRUCTURE OF THE CYTOCHROME C2 ISOLATED FROM PARACOCCUS DENITRIFICANS REFINED TO 1.7 ANGSTROMS RESOLUTION

Benning, M.M., Meyer, T.E., Holden, H.M.

(1994) Arch Biochem Biophys 310: 460-466

Released	1994-09-30
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Paracoccus denitrificans
Macromolecule	CYTOCHROME C2

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1E2R: Entity 1	Download File View File

CYTOCHROME CD1 NITRITE REDUCTASE, REDUCED AND CYANIDE BOUND

Fulop, V.

(2000) J Biological Chem 275: 25089

Released	2000-05-30
Method	X-RAY DIFFRACTION 1.59 Å
Chain IDs	A, B
Organism	Paracoccus denitrificans
Macromolecule	NITRITE REDUCTASE

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1EFP: Entity 1	Download File View File

ELECTRON TRANSFER FLAVOPROTEIN (ETF) FROM PARACOCCUS DENITRIFICANS

Roberts, D.L., Salazar, D., Fulmer, J.P., Frerman, F.E., Kim, J.J.-P.

(1999) Biochemistry 38: 1977-1989

Released	1999-08-09
Method	X-RAY DIFFRACTION 2.6 Å
Chain IDs	A, C
Organism	Paracoccus denitrificans
Macromolecule	PROTEIN (ELECTRON TRANSFER FLAVOPROTEIN)

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1EFP: Entity 2	Download File View File

ELECTRON TRANSFER FLAVOPROTEIN (ETF) FROM PARACOCCUS DENITRIFICANS

Roberts, D.L., Salazar, D., Fulmer, J.P., Frerman, F.E., Kim, J.J.-P.

(1999) Biochemistry 38: 1977-1989

Released	1999-08-09
Method	X-RAY DIFFRACTION 2.6 Å
Chain IDs	B, D
Organism	Paracoccus denitrificans
Macromolecule	PROTEIN (ELECTRON TRANSFER FLAVOPROTEIN)

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1FWX: Entity 1	Download File View File

CRYSTAL STRUCTURE OF NITROUS OXIDE REDUCTASE FROM P. DENITRIFICANS

Brown, K., Djinovic-Carugo, K., Haltia, T., Cabrito, I., Saraste, M., Moura, J.J., Moura, I., Tegoni, M., Cambillau, C.

(2000) J Biological Chem 275: 41133-41136

Released	2001-09-25
Method	X-RAY DIFFRACTION 1.6 Å
Chain IDs	A, B, C, D
Organism	Paracoccus denitrificans
Macromolecule	NITROUS OXIDE REDUCTASE

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1I6D: Entity 1	Download File View File

SOLUTION STRUCTURE OF THE FUNCTIONAL DOMAIN OF PARACOCCUS DENITRIFICANS CYTOCHROME C552 IN THE REDUCED STATE

Reincke, B., Perez, C., Pristovsek, P., Luecke, C., Ludwig, C., Loehr, F., Rogov, V.V., Ludwig, B., Rueterjans, H.

(2001) Biochemistry 40: 12312-12320

Released	2001-10-17
Method	SOLUTION NMR
Chain ID	A
Organism	Paracoccus denitrificans
Macromolecule	CYTOCHROME C552

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1I6E: Entity 1	Download File View File

SOLUTION STRUCTURE OF THE FUNCTIONAL DOMAIN OF PARACOCCUS DENITRIFICANS CYTOCHROME C552 IN THE OXIDIZED STATE

Reincke, B., Perez, C., Pristovsek, P., Luecke, C., Ludwig, C., Loehr, F., Rogov, V.V., Ludwig, B., Rueterjans, H.

(2001) Biochemistry 40: 12312-12320

Released	2001-10-17
Method	SOLUTION NMR
Chain ID	A
Organism	Paracoccus denitrificans
Macromolecule	CYTOCHROME C552

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1IOK: Entity 1	Download File View File

CRYSTAL STRUCTURE OF CHAPERONIN-60 FROM PARACOCCUS DENITRIFICANS

Fukami, T.A., Yohda, M., Taguchi, H., Yoshida, M., Miki, K.

(2001) J Mol Biology 312: 501-509

Released	2001-10-03
Method	X-RAY DIFFRACTION 3.2 Å
Chain IDs	A, C, D, E, F
Organism	Paracoccus denitrificans
Macromolecule	CHAPERONIN 60

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1JJU: Entity 1	Download File View File

Structure of a Quinohemoprotein Amine Dehydrogenase with a Unique Redox Cofactor and Highly Unusual Crosslinking

Datta, S., Mori, Y., Takagi, K., Kawaguchi, K., Chen, Z.-W., Kano, K., Ikeda, T., Okajima, T., Kuroda, S., Tanizawa, K., Mathews, F.S.

(2001) Proc Natl Acad Sci U S A 98: 14268-14273

Released	2001-12-12
Method	X-RAY DIFFRACTION 2.05 Å
Chain ID	A
Organism	Paracoccus denitrificans
Macromolecule	QUINOHEMOPROTEIN AMINE DEHYDROGENASE

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1JJU: Entity 2	Download File View File

Structure of a Quinohemoprotein Amine Dehydrogenase with a Unique Redox Cofactor and Highly Unusual Crosslinking

Datta, S., Mori, Y., Takagi, K., Kawaguchi, K., Chen, Z.-W., Kano, K., Ikeda, T., Okajima, T., Kuroda, S., Tanizawa, K., Mathews, F.S.

(2001) Proc Natl Acad Sci U S A 98: 14268-14273

Released	2001-12-12
Method	X-RAY DIFFRACTION 2.05 Å
Chain ID	B
Organism	Paracoccus denitrificans
Macromolecule	QUINOHEMOPROTEIN AMINE DEHYDROGENASE

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1JJU: Entity 3	Download File View File

Structure of a Quinohemoprotein Amine Dehydrogenase with a Unique Redox Cofactor and Highly Unusual Crosslinking

Datta, S., Mori, Y., Takagi, K., Kawaguchi, K., Chen, Z.-W., Kano, K., Ikeda, T., Okajima, T., Kuroda, S., Tanizawa, K., Mathews, F.S.

(2001) Proc Natl Acad Sci U S A 98: 14268-14273

Released	2001-12-12
Method	X-RAY DIFFRACTION 2.05 Å
Chain ID	C
Organism	Paracoccus denitrificans
Macromolecule	QUINOHEMOPROTEIN AMINE DEHYDROGENASE

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1LRW: Entity 1	Download File View File

Crystal structure of methanol dehydrogenase from P. denitrificans

Xia, Z.-X., Dai, W.-W., He, Y.-N., White, S.A., Mathews, F.S., Davidson, V.L.

(2003) J Biol Inorg Chem 8: 843-854

Released	2003-08-12
Method	X-RAY DIFFRACTION 2.5 Å
Chain IDs	A, C
Organism	Paracoccus denitrificans
Macromolecule	methanol dehydrogenase subunit 1

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1LRW: Entity 2	Download File View File

Crystal structure of methanol dehydrogenase from P. denitrificans

Xia, Z.-X., Dai, W.-W., He, Y.-N., White, S.A., Mathews, F.S., Davidson, V.L.

(2003) J Biol Inorg Chem 8: 843-854

Released	2003-08-12
Method	X-RAY DIFFRACTION 2.5 Å
Chain IDs	B, D
Organism	Paracoccus denitrificans
Macromolecule	methanol dehydrogenase subunit 2

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1MDA: Entity 1	Download File View File

CRYSTAL STRUCTURE OF AN ELECTRON-TRANSFER COMPLEX BETWEEN METHYLAMINE DEHYDROGENASE AND AMICYANIN

Chen, L., Durley, R., Mathews, F.S.

(1992) Biochemistry 31: 4959-4964

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.5 Å
Chain IDs	A [auth H], C [auth J]
Organism	Paracoccus denitrificans
Macromolecule	METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT)