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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "mtrB"

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Geobacillus stearothermophilus (21)
	synthetic construct (10)
	Bacillus subtilis (3)
	Halalkalibacterium halodurans (3)

Taxonomy

	Bacteria (25)
	other sequences (10)

Experimental Method

	X-RAY DIFFRACTION (18)
	ELECTRON MICROSCOPY (7)

Polymer Entity Type

	Protein (25)
	RNA (10)

Refinement Resolution (Å)

	1.5 - 2.0 (13)
	2.0 - 2.5 (1)
	2.5 - 3.0 (3)
	3.0 - 3.5 (3)
	3.5 - 4.0 (3)
	4.0 - 4.5 (2)

Release Date

	1995 - 1999 (1)
	2005 - 2009 (6)
	2010 - 2014 (1)
	2015 - 2019 (12)
	2020 - 2024 (2)
	2025 - 2029 (3)

Symmetry Type

	Cyclic (21)
	Octahedral (4)

SCOP Classification

	All beta proteins (5)
	Artifacts (1)

AllSelected

1 to 25 of 25 Structures

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1WAP \| pdb_00001wap	Download File View File

TRP RNA-BINDING ATTENUATION PROTEIN IN COMPLEX WITH L-TRYPTOPHAN

Antson, A.A., Dodson, E.J., Gollnick, P.

(1995) Nature 374: 693-700

Released	1995-06-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus subtilis
Macromolecule	TRP RNA-BINDING ATTENUATION PROTEIN (protein)
Unique Ligands	TRP

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2EXS \| pdb_00002exs	Download File View File

TRAP3 (engineered TRAP)

Heddle, J.G., Yokoyama, T., Yamashita, I., Park, S.Y., Tame, J.R.H.

(2006) Structure 14: 925-933

Released	2006-08-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Transcription attenuation protein mtrB (protein)
Unique Ligands	TRP

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2EXT \| pdb_00002ext	Download File View File

TRAP4 (engineered TRAP)

Heddle, J.G., Yokoyama, T., Yamashita, I., Park, S.Y., Tame, J.R.H.

(2006) Structure 14: 925-933

Released	2006-08-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Transcription attenuation protein mtrB (protein)
Unique Ligands	TRP

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2ZCZ \| pdb_00002zcz	Download File View File

Crystal structures and thermostability of mutant TRAP3 A7 (ENGINEERED TRAP)

Watanabe, M., Mishima, Y., Yamashita, I., Park, S.Y., Tame, J.R.H., Heddle, J.G.

(2008) Protein Sci 17: 518-526

Released	2008-04-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Transcription attenuation protein mtrB (protein)
Unique Ligands	TRP

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2ZD0 \| pdb_00002zd0	Download File View File

Crystal structures and thermostability of mutant TRAP3 A5 (ENGINEERED TRAP)

Watanabe, M., Mishima, Y., Yamashita, I., Park, S.Y., Tame, J.R.H., Heddle, J.G.

(2008) Protein Sci 17: 518-526

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Transcription attenuation protein mtrB (protein)
Unique Ligands	TRP

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2ZP8 \| pdb_00002zp8	Download File View File

The Nature of the TRAP:Anti-TRAP complex

Watanabe, M., Heddle, J.G., Unzai, S., Akashi, S., Park, S.Y., Tame, J.R.H.

(2009) Proc Natl Acad Sci U S A 106: 2176-2181

Released	2009-02-03
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bacillus subtilis Geobacillus stearothermophilus
Macromolecule	Transcription attenuation protein mtrB (protein) Tryptophan RNA-binding attenuator protein-inhibitory protein (protein)
Unique Ligands	TRP, ZN

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2ZP9 \| pdb_00002zp9	Download File View File

The Nature of the TRAP:Anti-TRAP complex

Watanabe, M., Heddle, J.G., Unzai, S., Akashi, S., Park, S.Y., Tame, J.R.H.

(2009) Proc Natl Acad Sci U S A 106: 2176-2181

Released	2009-02-03
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bacillus subtilis Geobacillus stearothermophilus
Macromolecule	Transcription attenuation protein mtrB (protein) Tryptophan RNA-binding attenuator protein-inhibitory protein (protein)
Unique Ligands	TRP, ZN

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3AQD \| pdb_00003aqd	Download File View File

Unliganded TRAP

Malay, A.A.D., Watanabe, M., Heddle, J.G., Tame, J.R.H.

To be published

Released	2010-12-29
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Transcription attenuation protein mtrB (protein)

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5EEU \| pdb_00005eeu	Download File View File

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 1.31 MGy

Bury, C.S., McGeehan, J.E., Garman, E.F., Shevtsov, M.B.

(2016) Acta Crystallogr D Struct Biol 72: 648-657

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	Transcription attenuation protein MtrB (protein) (GAGUU)10GAG 53-NUCLEOTIDE RNA (nucleic acid)
Unique Ligands	TRP

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5EEV \| pdb_00005eev	Download File View File

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 3.88 MGy

Bury, C.S., McGeehan, J.E., Garman, E.F., Shevtsov, M.B.

(2016) Acta Crystallogr D Struct Biol 72: 648-657

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	Transcription attenuation protein MtrB (protein) (GAGUU)10GAG 53-NUCLEOTIDE RNA (nucleic acid)
Unique Ligands	TRP

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5EEW \| pdb_00005eew	Download File View File

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 6.45 MGy

Bury, C.S., McGeehan, J.E., Garman, E.F., Shevtsov, M.B.

(2016) Acta Crystallogr D Struct Biol 72: 648-657

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	Transcription attenuation protein MtrB (protein) (GAGUU)10GAG 53-NUCLEOTIDE RNA (nucleic acid)
Unique Ligands	TRP

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5EEX \| pdb_00005eex	Download File View File

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 9.02 MGy

Bury, C.S., McGeehan, J.E., Garman, E.F., Shevtsov, M.B.

(2016) Acta Crystallogr D Struct Biol 72: 648-657

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	Transcription attenuation protein MtrB (protein) (GAGUU)10GAG 53-NUCLEOTIDE RNA (nucleic acid)
Unique Ligands	TRP

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5EEY \| pdb_00005eey	Download File View File

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 11.6 MGy

Bury, C.S., McGeehan, J.E., Garman, E.F., Shevtsov, M.B.

(2016) Acta Crystallogr D Struct Biol 72: 648-657

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	Transcription attenuation protein MtrB (protein) (GAGUU)10GAG 53-NUCLEOTIDE RNA (nucleic acid)
Unique Ligands	TRP

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5EEZ \| pdb_00005eez	Download File View File

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 14.2 MGy

Bury, C.S., McGeehan, J.E., Garman, E.F., Shevtsov, M.B.

(2016) Acta Crystallogr D Struct Biol 72: 648-657

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	Transcription attenuation protein MtrB (protein) (GAGUU)10GAG 53-NUCLEOTIDE RNA (nucleic acid)
Unique Ligands	TRP

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5EF0 \| pdb_00005ef0	Download File View File

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 16.7 MGy

Bury, C.S., McGeehan, J.E., Garman, E.F., Shevtsov, M.B.

(2016) Acta Crystallogr D Struct Biol 72: 648-657

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	Transcription attenuation protein MtrB (protein) (GAGUU)10GAG 53-NUCLEOTIDE RNA (nucleic acid)
Unique Ligands	TRP

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5EF1 \| pdb_00005ef1	Download File View File

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 19.3 MGy

Bury, C.S., McGeehan, J.E., Garman, E.F., Shevtsov, M.B.

(2016) Acta Crystallogr D Struct Biol 72: 648-657

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	Transcription attenuation protein MtrB (protein) (GAGUU)10GAG 53-NUCLEOTIDE RNA (nucleic acid)
Unique Ligands	TRP

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5EF2 \| pdb_00005ef2	Download File View File

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 21.9 MGy

Bury, C.S., McGeehan, J.E., Garman, E.F., Shevtsov, M.B.

(2016) Acta Crystallogr D Struct Biol 72: 648-657

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	Transcription attenuation protein MtrB (protein) (GAGUU)10GAG 53-NUCLEOTIDE RNA (nucleic acid)
Unique Ligands	TRP

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5EF3 \| pdb_00005ef3	Download File View File

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 25.0 MGy

Bury, C.S., McGeehan, J.E., Garman, E.F., Shevtsov, M.B.

(2016) Acta Crystallogr D Struct Biol 72: 648-657

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	Transcription attenuation protein MtrB (protein) (GAGUU)10GAG 53-NUCLEOTIDE RNA (nucleic acid)
Unique Ligands	TRP

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6RVV \| pdb_00006rvv	Download File View File

Structure of left-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges.

Malay, A.D., Miyazaki, N., Biela, A.P., Iwasaki, K., Heddle, J.G.

(2019) Nature 569: 438-442

Released	2019-06-12
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Transcription attenuation protein MtrB (protein)
Unique Ligands	AU

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6RVW \| pdb_00006rvw	Download File View File

Structure of right-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges.

Malay, A.D., Miyazaki, N., Biela, A.P., Iwasaki, K., Heddle, J.G.

(2019) Nature 569: 438-442

Released	2019-06-12
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Transcription attenuation protein MtrB (protein)
Unique Ligands	AU

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8R59 \| pdb_00008r59	Download File View File

Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (levo form)

Biela, A.P., Heddle, J.G.

(2024) Macromol Rapid Commun e2400712-e2400712

Released	2024-12-25
Method	ELECTRON MICROSCOPY 2.86 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Transcription attenuation protein MtrB (protein)
Unique Ligands	CO

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8R5A \| pdb_00008r5a	Download File View File

Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (dextro form)

Biela, A.P., Heddle, J.G.

(2024) Macromol Rapid Commun e2400712-e2400712

Released	2024-12-25
Method	ELECTRON MICROSCOPY 2.84 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Transcription attenuation protein MtrB (protein)
Unique Ligands	CO

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9BDS \| pdb_00009bds	Download File View File

Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant dTRAP with Trp

Yang, H., Stachowski, K., Foster, M.

(2025) Proc Natl Acad Sci U S A 122: e2409030121-e2409030121

Released	2025-01-22
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Halalkalibacterium halodurans
Macromolecule	Transcription attenuation protein MtrB (protein)
Unique Ligands	TRP

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9BE7 \| pdb_00009be7	Download File View File

Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant dTRAP without Trp

Yang, H., Stachowski, K., Foster, M.

(2025) Proc Natl Acad Sci U S A 122: e2409030121-e2409030121

Released	2025-01-22
Method	ELECTRON MICROSCOPY 4.24 Å
Organisms	Halalkalibacterium halodurans
Macromolecule	Transcription attenuation protein MtrB (protein)

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9BE8 \| pdb_00009be8	Download File View File

Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant T49A/T52A dTRAP with Trp

Yang, H., Stachowski, K., Foster, M.

(2025) Proc Natl Acad Sci U S A 122: e2409030121-e2409030121

Released	2025-01-22
Method	ELECTRON MICROSCOPY 4.14 Å
Organisms	Halalkalibacterium halodurans
Macromolecule	Transcription attenuation protein MtrB (protein)
Unique Ligands	TRP

1 to 25 of 25 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

1WAP | pdb_00001wap

2EXS | pdb_00002exs

2EXT | pdb_00002ext

2ZCZ | pdb_00002zcz

2ZD0 | pdb_00002zd0

2ZP8 | pdb_00002zp8

2ZP9 | pdb_00002zp9

3AQD | pdb_00003aqd

5EEU | pdb_00005eeu

5EEV | pdb_00005eev

5EEW | pdb_00005eew

5EEX | pdb_00005eex

5EEY | pdb_00005eey

5EEZ | pdb_00005eez

5EF0 | pdb_00005ef0

5EF1 | pdb_00005ef1

5EF2 | pdb_00005ef2

5EF3 | pdb_00005ef3

6RVV | pdb_00006rvv

6RVW | pdb_00006rvw

8R59 | pdb_00008r59

8R5A | pdb_00008r5a

9BDS | pdb_00009bds

9BE7 | pdb_00009be7

9BE8 | pdb_00009be8