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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 309 Structures.

Refinements

Structure Determination Methodology

experimental (309)

Scientific Name of Source Organism

	Homo sapiens (67)
	Mycobacterium tuberculosis (43)
	Bos taurus (12)
	synthetic construct (11)
	Crambe hispanica subsp. abyssinica (10)
	Mus musculus (9)
	Staphylococcus aureus subsp. aureus NCTC 8325 (6)
	Gallus gallus (5)
	Thermus thermophilus HB8 (5)
	Neurospora crassa OR74A (4)

More...

Taxonomy

	Eukaryota (153)
	Bacteria (139)
	other sequences (11)
	Riboviria (6)
	Varidnaviria (3)
	Archaea (2)
	Duplodnaviria (1)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (309)

Polymer Entity Type

	Protein (307)
	DNA (9)
	RNA (9)

Refinement Resolution (Å)

	< 0.5 (1)
	0.5 - 1.0 (23)
	1.0 - 1.5 (47)
	1.5 - 2.0 (132)
	2.0 - 2.5 (79)
	2.5 - 3.0 (17)
	3.0 - 3.5 (6)
	3.5 - 4.0 (4)

Release Date

	1990 - 1994 (7)
	1995 - 1999 (10)
	2000 - 2004 (33)
	2005 - 2009 (62)
	2010 - 2014 (74)
	2015 - 2019 (55)
	2020 - 2024 (63)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (57)
	Ligases (45)
	Transferases (32)
	Oxidoreductases (27)
	Lyases (6)
	Isomerases (1)

Membrane Protein Annotation

	OPM (5)
	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (169)
	Cyclic (124)
	Dihedral (18)
	Helical (1)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (89)
	All alpha proteins (31)
	All beta proteins (31)
	Alpha and beta proteins (a+b) (24)
	Artifacts (15)
	Small proteins (12)
	Peptides (4)
	Multi-domain proteins (alpha and beta) (2)
	Coiled coil proteins (1)
	Low resolution protein structures (1)

AllSelected

1 to 25 of 309 Structures

Page 1 of 13

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1A7S \| pdb_00001a7s	Download File View File

ATOMIC RESOLUTION STRUCTURE OF HBP

Karlsen, S., Iversen, L.F., Larsen, I.K., Flodgaard, H.J., Kastrup, J.S.

(1998) Acta Crystallogr D Biol Crystallogr 54: 598-609

Released	1999-03-23
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Homo sapiens
Macromolecule	HEPARIN BINDING PROTEIN (protein)
Unique Ligands	CL, EOH, NAG
Unique branched monosaccharides	NAG

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1AB1 \| pdb_00001ab1	Download File View File

SI FORM CRAMBIN

Teeter, M.M., Yamano, A.

(1997) J Biological Chem 272: 9597-9600

Released	1997-08-12
Method	X-RAY DIFFRACTION 0.89 Å
Organisms	Crambe hispanica subsp. abyssinica
Macromolecule	CRAMBIN (SER22/ILE25) (protein)
Unique Ligands	EOH

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1ADB \| pdb_00001adb	Download File View File

CRYSTALLOGRAPHIC STUDIES OF ISOSTERIC NAD ANALOGUES BOUND TO ALCOHOL DEHYDROGENASE: SPECIFICITY AND SUBSTRATE BINDING IN TWO TERNARY COMPLEXES

Li, H., Hallows, W.A., Punzi, J.S., Pankiewicz, K.W., Watanabe, K.A., Goldstein, B.M.

(1994) Biochemistry 33: 11734-11744

Released	1995-06-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Equus caballus
Macromolecule	ALCOHOL DEHYDROGENASE (protein)
Unique Ligands	CND, EOH, ZN

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1ADC \| pdb_00001adc	Download File View File

CRYSTALLOGRAPHIC STUDIES OF ISOSTERIC NAD ANALOGUES BOUND TO ALCOHOL DEHYDROGENASE: SPECIFICITY AND SUBSTRATE BINDING IN TWO TERNARY COMPLEXES

Li, H., Hallows, W.A., Punzi, J.S., Pankiewicz, K.W., Watanabe, K.A., Goldstein, B.M.

(1994) Biochemistry 33: 11734-11744

Released	1995-06-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Equus caballus
Macromolecule	ALCOHOL DEHYDROGENASE (protein)
Unique Ligands	EOH, PAD, ZN

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1ALZ \| pdb_00001alz	Download File View File

GRAMICIDIN D FROM BACILLUS BREVIS (ETHANOL SOLVATE)

Burkhart, B.M., Pangborn, W.A., Duax, W.L., Langs, D.A.

(1998) Biophys J 75: 2135

Released	1998-03-04
Method	X-RAY DIFFRACTION 0.86 Å
Organisms	Brevibacillus brevis
Macromolecule	ILE-GRAMICIDIN C (protein) VAL-GRAMICIDIN A (protein)
Unique Ligands	EOH

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1CBN \| pdb_00001cbn	Download File View File

ATOMIC RESOLUTION (0.83 ANGSTROMS) CRYSTAL STRUCTURE OF THE HYDROPHOBIC PROTEIN CRAMBIN AT 130 K

Teeter, M.M., Roe, S.M., Heo, N.H.

(1993) J Mol Biology 230: 292-311

Released	1994-01-31
Method	X-RAY DIFFRACTION 0.83 Å
Organisms	Crambe hispanica subsp. abyssinica
Macromolecule	CRAMBIN (protein)
Unique Ligands	EOH

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1CLL \| pdb_00001cll	Download File View File

CALMODULIN STRUCTURE REFINED AT 1.7 ANGSTROMS RESOLUTION

Chattopadhyaya, R., Quiocho, F.A.

(1992) J Mol Biology 228: 1177-1192

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	CALMODULIN (protein)
Unique Ligands	CA, EOH

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1CNR \| pdb_00001cnr	Download File View File

CORRELATED DISORDER OF THE PURE PRO22(SLASH)LEU25 FORM OF CRAMBIN AT 150K REFINED TO 1.05 ANGSTROMS RESOLUTION

Yamano, A., Teeter, M.M.

(1994) J Biological Chem 269: 13956-13965

Released	1994-08-31
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Crambe hispanica subsp. abyssinica
Macromolecule	CRAMBIN (protein)
Unique Ligands	EOH

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1DBA \| pdb_00001dba	Download File View File

THREE-DIMENSIONAL STRUCTURE OF AN ANTI-STEROID FAB' AND PROGESTERONE-FAB' COMPLEX

Arevalo, J.H., Wilson, I.A.

(1993) J Mol Biology 231: 103-118

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	IGG1-KAPPA DB3 FAB (HEAVY CHAIN) (protein) IGG1-KAPPA DB3 FAB (LIGHT CHAIN) (protein)
Unique Ligands	EOH

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1DRB \| pdb_00001drb	Download File View File

CRYSTAL STRUCTURE OF UNLIGANDED ESCHERICHIA COLI DIHYDROFOLATE REDUCTASE. LIGAND-INDUCED CONFORMATIONAL CHANGES AND COOPERATIVITY IN BINDING

David, C., Kraut, J.

(1991) Biochemistry 30: 2227-2239

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Escherichia coli
Macromolecule	DIHYDROFOLATE REDUCTASE (protein)
Unique Ligands	CA, CL, EOH, MTX

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1E18 \| pdb_00001e18	Download File View File

TUNGSTEN-SUSBSTITUTED DMSO REDUCTASE FROM RHODOBACTER CAPSULATUS

Bailey, S., Stewart, L.J.

(2000) J Mol Biology 299: 593

Released	2000-06-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rhodobacter capsulatus
Macromolecule	DMSO REDUCTASE. (protein)
Unique Ligands	6WO, EOH, PGD

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1EN8 \| pdb_00001en8	Download File View File

1 A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM

Chiu, T.K., Dickerson, R.E.

(2000) J Mol Biology 301: 915-945

Released	2000-09-25
Method	X-RAY DIFFRACTION 0.985 Å
Macromolecule	DNA (5'-D(CPCPAPAPCPGPTPTPGPG)-3') (nucleic acid)
Unique Ligands	CA, EOH

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1ENE \| pdb_00001ene	Download File View File

1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM.

Chiu, T.K., Dickerson, R.E.

(2000) J Mol Biology 301: 915-945

Released	2000-09-25
Method	X-RAY DIFFRACTION 0.985 Å
Macromolecule	DNA (5'-D(CPCPAPGPCPGPCPTPGPG)-3') (nucleic acid)
Unique Ligands	CA, EOH

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1F8F \| pdb_00001f8f	Download File View File

CRYSTAL STRUCTURE OF BENZYL ALCOHOL DEHYDROGENASE FROM ACINETOBACTER CALCOACETICUS

Beauchamp, J.C., Gillooly, D., Warwicker, J., Fewson, C.A., Lapthorn, A.J.

To be published

Released	2003-07-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Acinetobacter calcoaceticus
Macromolecule	BENZYL ALCOHOL DEHYDROGENASE (protein)
Unique Ligands	EOH, NAD, SO4, ZN

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1FY1 \| pdb_00001fy1	Download File View File

[R23S,F25E]HBP, A MUTANT OF HUMAN HEPARIN BINDING PROTEIN (CAP37)

Kastrup, J.S., Linde, V., Pedersen, A.K., Stoffer, B., Iversen, L.F., Larsen, I.K., Rasmussen, P.B., Flodgaard, H.J., Bjorn, S.E.

(2001) Proteins 42: 442-451

Released	2001-09-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	HEPARIN-BINDING PROTEIN (protein)
Unique Ligands	EOH, NAG
Unique branched monosaccharides	NAG

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1FY3 \| pdb_00001fy3	Download File View File

[G175Q]HBP, A mutant of human heparin binding protein (CAP37)

Kastrup, J.S., Linde, V., Pedersen, A.K., Stoffer, B., Iversen, L.F., Larsen, I.K., Rasmussen, P.B., Flodgaard, H.J., Bjorn, S.E.

(2001) Proteins 42: 442-451

Released	2001-09-28
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens
Macromolecule	HEPARIN-BINDING PROTEIN (protein)
Unique Ligands	CL, EOH, NAG
Unique branched monosaccharides	NAG

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1FZ7 \| pdb_00001fz7	Download File View File

METHANE MONOOXYGENASE HYDROXYLASE, FORM III SOAKED IN 0.9 M ETHANOL

Whittington, D.A., Sazinsky, M.H., Lippard, S.J.

(2001) J Am Chem Soc 123: 1794-1795

Released	2001-02-28
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Methylococcus capsulatus
Macromolecule	METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN (protein) METHANE MONOOXYGENASE COMPONENT A, BETA CHAIN (protein) METHANE MONOOXYGENASE COMPONENT A, GAMMA CHAIN (protein)
Unique Ligands	CA, EOH, FE, FMT

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1GRH \| pdb_00001grh	Download File View File

INHIBITION OF HUMAN GLUTATHIONE REDUCTASE BY THE NITROSOUREA DRUGS 1,3-BIS(2-CHLOROETHYL)-1-NITROSOUREA AND 1-(2-CHLOROETHYL)-3-(2-HYDROXYETHYL)-1-NITROSOUREA

Karplus, P.A., Schulz, G.E.

(1988) Eur J Biochem 171: 193-198

Released	1994-01-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	GLUTATHIONE REDUCTASE (protein)
Unique Ligands	EOH, FAD, PO4

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1I1W \| pdb_00001i1w	Download File View File

0.89A Ultra high resolution structure of a Thermostable Xylanase from Thermoascus Aurantiacus

Natesh, R., Ramakumar, S., Viswamitra, M.A.

(2003) Acta Crystallogr D Biol Crystallogr 59: 105-117

Released	2003-01-07
Method	X-RAY DIFFRACTION 0.89 Å
Organisms	Thermoascus aurantiacus
Macromolecule	ENDO-1,4-BETA-XYLANASE (protein)
Unique Ligands	ACN, EOH, GOL, UNX

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1J0O \| pdb_00001j0o	Download File View File

High Resolution Crystal Structure of the wild type Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F

Ozawa, K., Yasukawa, F., Kumagai, J., Ohmura, T., Cusanvich, M.A., Tomimoto, Y., Ogata, H., Higuchi, Y., Akutsu, H.

(2003) Biophys J 85: 3367-3374

Released	2003-11-19
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Nitratidesulfovibrio vulgaris
Macromolecule	Cytochrome c3 (protein)
Unique Ligands	EOH, HEM

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1J0P \| pdb_00001j0p	Download File View File

Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F

Ozawa, K., Yasukawa, F., Kumagai, J., Ohmura, T., Cusanvich, M.A., Tomimoto, Y., Ogata, H., Higuchi, Y., Akutsu, H.

(2003) Biophys J 85: 3367-3374

Released	2003-11-19
Method	X-RAY DIFFRACTION 0.91 Å
Organisms	Nitratidesulfovibrio vulgaris
Macromolecule	Cytochrome c3 (protein)
Unique Ligands	EOH, HEM, SO4

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1J71 \| pdb_00001j71	Download File View File

Structure of the extracellular aspartic proteinase from Candida tropicalis yeast.

Symersky, J., Monod, M., Foundling, S.I.

(1997) Biochemistry 36: 12700-12710

Released	2001-05-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Candida tropicalis unidentified
Macromolecule	Aspartic proteinase (protein) Tetrapeptide Thr-Ile-Thr-Ser (protein)
Unique Ligands	EOH