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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = ATP

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Search Summary

This query matches 2,979 Structures.

Refinements

Structure Determination Methodology

experimental (2,979)

Scientific Name of Source Organism

	Homo sapiens (832)
	Oryctolagus cuniculus (174)
	Escherichia coli (168)
	Mus musculus (151)
	synthetic construct (149)
	Saccharomyces cerevisiae (131)
	Escherichia coli K-12 (103)
	Bos taurus (72)
	Bacillus subtilis (69)
	Saccharomyces cerevisiae S288C (64)

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Taxonomy

	Eukaryota (1,697)
	Bacteria (1,091)
	other sequences (150)
	Archaea (145)
	Riboviria (56)
	Duplodnaviria (41)
	Monodnaviria (19)
	Varidnaviria (14)
	unclassified sequences (13)
	Eukaryota (eukaryotes) (11)

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Experimental Method

	X-RAY DIFFRACTION (1,533)
	ELECTRON MICROSCOPY (1,438)
	SOLUTION NMR (8)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (2,976)
	DNA (227)
	RNA (205)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (74)
	1.5 - 2.0 (387)
	2.0 - 2.5 (543)
	2.5 - 3.0 (656)
	3.0 - 3.5 (638)
	3.5 - 4.0 (372)
	4.0 - 4.5 (158)
	> 4.5 (142)

Release Date

	1980 - 1984 (1)
	1990 - 1994 (9)
	1995 - 1999 (44)
	2000 - 2004 (139)
	2005 - 2009 (267)
	2010 - 2014 (389)
	2015 - 2019 (585)
	2020 - 2024 (1,395)
	2025 - 2029 (150)

Enzyme Classification Name

	Hydrolases (794)
	Transferases (745)
	Translocases (356)
	Ligases (268)
	Isomerases (207)
	Oxidoreductases (124)
	Lyases (58)

Membrane Protein Annotation

	PDBTM (389)
	mpstruc (325)
	OPM (251)
	MemProtMD (204)

Symmetry Type

	Asymmetric (1,884)
	Cyclic (902)
	Dihedral (227)
	Helical (32)
	Tetrahedral (11)
	Icosahedral (2)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (489)
	Alpha and beta proteins (a+b) (352)
	All beta proteins (92)
	All alpha proteins (115)
	Artifacts (122)
	Multi-domain proteins (alpha and beta) (33)
	Membrane and cell surface proteins and peptides (14)
	Low resolution protein structures (2)
	Small proteins (10)
	Coiled coil proteins (2)

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AllSelected

1 to 25 of 2,979 Structures

Page 1 of 120

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1A0I \| pdb_00001a0i	Download File View File

ATP-DEPENDENT DNA LIGASE FROM BACTERIOPHAGE T7 COMPLEX WITH ATP

Subramanya, H.S., Doherty, A.J., Ashford, S.R., Wigley, D.B.

(1996) Cell 85: 607-615

Released	1998-03-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia phage T7
Macromolecule	DNA LIGASE (protein)
Unique Ligands	ATP

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1A49 \| pdb_00001a49	Download File View File

BIS MG-ATP-K-OXALATE COMPLEX OF PYRUVATE KINASE

Larsen, T.M., Benning, M.M., Rayment, I., Reed, G.H.

(1998) Biochemistry 37: 6247-6255

Released	1999-04-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PYRUVATE KINASE (protein)
Unique Ligands	ATP, K, MG, OXL

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1A5U \| pdb_00001a5u	Download File View File

PYRUVATE KINASE COMPLEX WITH BIS MG-ATP-NA-OXALATE

Larsen, T.M., Benning, M.M., Rayment, I., Reed, G.H.

(1998) Biochemistry 37: 6247-6255

Released	1999-03-02
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PYRUVATE KINASE (protein)
Unique Ligands	ATP, MG, NA, OXL

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1A82 \| pdb_00001a82	Download File View File

DETHIOBIOTIN SYNTHETASE FROM ESCHERICHIA COLI, COMPLEX WITH SUBSTRATES ATP AND DIAMINOPELARGONIC ACID

Kaeck, H., Gibson, K.J., Lindqvist, Y., Schneider, G.

(1998) Proc Natl Acad Sci U S A 95: 5495-5500

Released	1999-05-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	DETHIOBIOTIN SYNTHETASE (protein)
Unique Ligands	ATP, DNN, MG

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1AQ2 \| pdb_00001aq2	Download File View File

PHOSPHOENOLPYRUVATE CARBOXYKINASE

Tari, L.W., Matte, A., Goldie, H., Delbaere, L.T.J.

(1997) Nat Struct Biol 4: 990-994

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	PHOSPHOENOLPYRUVATE CARBOXYKINASE (protein)
Unique Ligands	ATP, MG, MN, PYR

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1ASZ \| pdb_00001asz	Download File View File

THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTION

Cavarelli, J., Rees, B., Thierry, J.C., Moras, D.

(1994) EMBO J 13: 327-337

Released	1995-05-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ASPARTYL-tRNA SYNTHETASE (protein) T-RNA (75-MER) (nucleic acid)
Unique Ligands	ATP

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1ATN \| pdb_00001atn	Download File View File

Atomic structure of the actin:DNASE I complex

Kabsch, W., Mannherz, H.G., Suck, D., Pai, E., Holmes, K.C.

(1990) Nature 347: 37-44

Released	1992-07-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus Oryctolagus cuniculus
Macromolecule	ACTIN (protein) DEOXYRIBONUCLEASE I (protein)
Unique Ligands	ATP, CA
Unique branched monosaccharides	BMA, NAG

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1ATP \| pdb_00001atp	Download File View File

2.2 angstrom refined crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MNATP and a peptide inhibitor

Zheng, J., Trafny, E.A., Knighton, D.R., Xuong, N.-H., Taylor, S.S., Teneyck, L.F., Sowadski, J.M.

(1993) Acta Crystallogr D Biol Crystallogr 49: 362-365

Released	1993-04-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	PEPTIDE INHIBITOR PKI(5-24) (protein) cAMP-DEPENDENT PROTEIN KINASE (protein)
Unique Ligands	ATP, MN

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1AYL \| pdb_00001ayl	Download File View File

PHOSPHOENOLPYRUVATE CARBOXYKINASE

Tari, L.W., Pugazenthi, U., Goldie, H., Delbaere, L.T.J.

(1996) Nat Struct Biol 3: 355-363

Released	1997-01-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	PHOSPHOENOLPYRUVATE CARBOXYKINASE (protein)
Unique Ligands	ATP, MG, OXL

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1B0U \| pdb_00001b0u	Download File View File

ATP-BINDING SUBUNIT OF THE HISTIDINE PERMEASE FROM SALMONELLA TYPHIMURIUM

Hung, L.-W., Wang, I.X., Nikaido, K., Liu, P.-Q., Ames, G.F.-L., Kim, S.-H.

(1998) Nature 396: 703-707

Released	1999-11-17
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	HISTIDINE PERMEASE (protein)
Unique Ligands	ATP, CL

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1B38 \| pdb_00001b38	Download File View File

HUMAN CYCLIN-DEPENDENT KINASE 2

Brown, N.R., Noble, M.E.M., Lawrie, A.M., Morris, M.C., Tunnah, P., Divita, G., Johnson, L.N., Endicott, J.A.

(1999) J Biological Chem 274: 8746-8756

Released	1998-12-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (CELL DIVISION PROTEIN KINASE 2) (protein)
Unique Ligands	ATP, MG

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1B39 \| pdb_00001b39	Download File View File

HUMAN CYCLIN-DEPENDENT KINASE 2 PHOSPHORYLATED ON THR 160

Brown, N.R., Noble, M.E.M., Lawrie, A.M., Morris, M.C., Tunnah, P., Divita, G., Johnson, L.N., Endicott, J.A.

(1999) J Biological Chem 274: 8746-8756

Released	1998-12-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (CELL DIVISION PROTEIN KINASE 2) (protein)
Unique Ligands	ATP, MG

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1B76 \| pdb_00001b76	Download File View File

GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH ATP

Arnez, J.G., Moras, D.

(1999) J Mol Biology 286: 1449-1459

Released	1999-01-28
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Glycine--tRNA ligase (protein)
Unique Ligands	ATP

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1B8A \| pdb_00001b8a	Download File View File

ASPARTYL-TRNA SYNTHETASE

Schmitt, E., Moulinier, L., Thierry, J.-C., Moras, D.

(1998) EMBO J 17: 5227-5237

Released	1999-02-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermococcus kodakarensis KOD1
Macromolecule	PROTEIN (ASPARTYL-TRNA SYNTHETASE) (protein)
Unique Ligands	ATP, MN

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1BCP \| pdb_00001bcp	Download File View File

BINARY COMPLEX OF PERTUSSIS TOXIN AND ATP

Hazes, B., Read, R.J.

(1996) J Mol Biology 258: 661-671

Released	1997-06-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bordetella pertussis
Macromolecule	PERTUSSIS TOXIN (protein)
Unique Ligands	ATP

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1C0F \| pdb_00001c0f	Download File View File

CRYSTAL STRUCTURE OF DICTYOSTELIUM CAATP-ACTIN IN COMPLEX WITH GELSOLIN SEGMENT 1

Matsuura, Y., Stewart, M., Kawamoto, M., Kamiya, N., Saeki, K., Yasunaga, T., Wakabayashi, T.

(2000) J Mol Biology 296: 579-595

Released	2000-03-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Dictyostelium discoideum Homo sapiens
Macromolecule	ACTIN (protein) GELSOLIN SEGMENT 1 (protein)
Unique Ligands	ATP, CA

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1C0G \| pdb_00001c0g	Download File View File

CRYSTAL STRUCTURE OF 1:1 COMPLEX BETWEEN GELSOLIN SEGMENT 1 AND A DICTYOSTELIUM/TETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228K/T229A/A230Y/E360H)

Matsuura, Y., Stewart, M., Kawamoto, M., Kamiya, N., Saeki, K., Yasunaga, T., Wakabayashi, T.

(2000) J Mol Biology 296: 579-595

Released	2000-03-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Dictyostelium discoideum Homo sapiens Tetrahymena thermophila
Macromolecule	PROTEIN (CHIMERIC ACTIN) (protein) PROTEIN (GELSOLIN SEGMENT 1) (protein)
Unique Ligands	ATP, CA

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1CSN \| pdb_00001csn	Download File View File

BINARY COMPLEX OF CASEIN KINASE-1 WITH MGATP

Xu, R.-M., Cheng, X.

(1995) EMBO J 14: 1015-1023

Released	1995-07-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	CASEIN KINASE-1 (protein)
Unique Ligands	ATP, MG, SO4

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1D4X \| pdb_00001d4x	Download File View File

Crystal Structure of Caenorhabditis Elegans Mg-ATP Actin Complexed with Human Gelsolin Segment 1 at 1.75 A resolution.

Vorobiev, S., Ono, S., Almo, S.C.

(2003) Proc Natl Acad Sci U S A 100: 5760-5765

Released	2001-05-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Caenorhabditis elegans Homo sapiens
Macromolecule	C. ELEGANS ACTIN 1/3 (protein) GELSOLIN (protein)
Unique Ligands	ATP, CA, MG, SO2, SO4

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1D9Z \| pdb_00001d9z	Download File View File

CRYSTAL STRUCTURE OF THE DNA REPAIR PROTEIN UVRB IN COMPLEX WITH ATP

Theis, K., Chen, P.J., Skorvaga, M., Van Houten, B., Kisker, C.

(1999) EMBO J 18: 6899-6907

Released	2000-05-03
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	[Bacillus] caldotenax
Macromolecule	EXCINUCLEASE UVRABC COMPONENT UVRB (protein)
Unique Ligands	ATP, MG, ZN

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1DEJ \| pdb_00001dej	Download File View File

CRYSTAL STRUCTURE OF A DICTYOSTELIUM/TETRAHYMENA CHIMERA ACTIN (MUTANT 646: Q228K/T229A/A230Y/A231K/S232E/E360H) IN COMPLEX WITH HUMAN GELSOLIN SEGMENT 1

Matsuura, Y., Stewart, M., Kawamoto, M., Kamiya, N., Saeki, K., Yasunaga, T., Wakabayashi, T.

(2000) J Mol Biology 296: 579-595

Released	2000-03-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Dictyostelium discoideum Homo sapiens Tetrahymena thermophila
Macromolecule	CHIMERIC ACTIN (protein) GELSOLIN (protein)
Unique Ligands	ATP, CA

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1DO0 \| pdb_00001do0	Download File View File

ORTHORHOMBIC CRYSTAL FORM OF HEAT SHOCK LOCUS U (HSLU) FROM ESCHERICHIA COLI

Bochtler, M., Hartmann, C., Song, H.K., Bourenkov, G.P., Bartunik, H.D.

(2000) Nature 403: 800-805

Released	2000-02-18
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (HEAT SHOCK LOCUS U) (protein)
Unique Ligands	ATP, MG, SO4

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1DV2 \| pdb_00001dv2	Download File View File

The structure of biotin carboxylase, mutant E288K, complexed with ATP

Thoden, J.B., Blanchard, C.Z., Holden, H.M., Waldrop, G.L.

(2000) J Biological Chem 275: 16183-16190

Released	2000-06-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	BIOTIN CARBOXYLASE (protein)
Unique Ligands	ATP

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1DY3 \| pdb_00001dy3	Download File View File

Ternary complex of 7,8-dihydro-6-hydroxymethylpterinpyrophosphokinase from Escherichia coli with ATP and a substrate analogue.

Stammers, D.K., Achari, A., Somers, D.O., Bryant, P.K., Rosemond, J., Scott, D.L., Champness, J.N.

(1999) FEBS Lett 456: 49

Released	2000-08-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	87Y, ATP, MG

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1E24 \| pdb_00001e24	Download File View File

LYSYL-TRNA SYNTHETASE (LYSU) HEXAGONAL FORM complexed with lysine and ATP and MN2+

Desogus, G., Todone, F., Brick, P., Onesti, S.

(2000) Biochemistry 39: 8418

Released	2000-07-28
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli K-12
Macromolecule	LYSYL-TRNA SYNTHETASE (protein)
Unique Ligands	ATP, GOL, LYS, MN

1 to 25 of 2,979 Structures

Page 1 of 120

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A0I | pdb_00001a0i

1A49 | pdb_00001a49

1A5U | pdb_00001a5u

1A82 | pdb_00001a82

1AQ2 | pdb_00001aq2

1ASZ | pdb_00001asz

1ATN | pdb_00001atn

1ATP | pdb_00001atp

1AYL | pdb_00001ayl

1B0U | pdb_00001b0u

1B38 | pdb_00001b38

1B39 | pdb_00001b39

1B76 | pdb_00001b76

1B8A | pdb_00001b8a

1BCP | pdb_00001bcp

1C0F | pdb_00001c0f

1C0G | pdb_00001c0g

1CSN | pdb_00001csn

1D4X | pdb_00001d4x

1D9Z | pdb_00001d9z

1DEJ | pdb_00001dej

1DO0 | pdb_00001do0

1DV2 | pdb_00001dv2

1DY3 | pdb_00001dy3

1E24 | pdb_00001e24