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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Zhu, W."

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Search Summary

This query matches 141 Structures.

Refinements

Structure Determination Methodology

experimental (141)

Scientific Name of Source Organism

	Homo sapiens (37)
	Staphylococcus aureus (11)
	Actinoalloteichus sp. WH1-2216-6 (10)
	Escherichia coli (9)
	Escherichia coli K-12 (8)
	Ostrinia furnacalis (8)
	Plasmodium vivax Sal-1 (6)
	synthetic construct (6)
	Microcystis aeruginosa FACHB-905 = DIANCHI905 (5)
	Streptomyces kaniharaensis (5)

More...

Taxonomy

	Bacteria (71)
	Eukaryota (57)
	Riboviria (9)
	other sequences (6)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (132)
	ELECTRON MICROSCOPY (8)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (138)
	DNA (3)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (11)
	1.5 - 2.0 (33)
	2.0 - 2.5 (57)
	2.5 - 3.0 (29)
	3.0 - 3.5 (7)
	3.5 - 4.0 (3)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (3)
	2010 - 2014 (44)
	2015 - 2019 (41)
	2020 - 2024 (48)
	2025 - 2029 (3)

Enzyme Classification Name

	Transferases (45)
	Hydrolases (23)
	Oxidoreductases (10)
	Isomerases (5)
	Ligases (3)
	Lyases (3)

Membrane Protein Annotation

	mpstruc (4)
	OPM (3)
	MemProtMD (2)
	PDBTM (2)

Symmetry Type

	Cyclic (78)
	Asymmetric (56)
	Dihedral (8)
	Icosahedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (31)
	All alpha proteins (23)
	Artifacts (6)
	All beta proteins (5)
	Alpha and beta proteins (a+b) (3)
	Small proteins (1)

AllSelected

1 to 25 of 141 Structures

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1J77 \| pdb_00001j77	Download File View File

Crystal Structure of Gram-negative Bacterial Heme Oxygenase Complexed with Heme

Schuller, D.J., Zhu, W., Stojiljkovic, I., Wilks, A., Poulos, T.L.

(2001) Biochemistry 40: 11552-11558

Released	2001-05-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Neisseria meningitidis
Macromolecule	HemO (protein)
Unique Ligands	HEM

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1PFT \| pdb_00001pft	Download File View File

N-TERMINAL DOMAIN OF TFIIB, NMR

Zhu, W., Zeng, Q., Colangelo, C.M., Lewis, L.M., Summers, M.F., Scott, R.A.

(1996) Nat Struct Biol 3: 122-124

Released	1996-08-17
Method	SOLUTION NMR
Organisms	Pyrococcus furiosus
Macromolecule	TFIIB (protein)
Unique Ligands	ZN

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2FZM \| pdb_00002fzm	Download File View File

Structure of the E. coli PutA proline dehydrogenase domain reduced by dithionite and complexed with SO2

Tanner, J.J.

(2007) Biochemistry 46: 483-491

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Bifunctional protein putA, Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) (protein)
Unique Ligands	FAD, SO2

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2FZN \| pdb_00002fzn	Download File View File

Structure of the E. coli PutA proline dehydrogenase domain reduced by dithionite and complexed with proline

Tanner, J.J.

To be published

Released	2006-12-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Bifunctional protein putA, Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) (protein)
Unique Ligands	FAD, PRO

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2HXG \| pdb_00002hxg	Download File View File

Crystal Structure of Mn2+ bound ECAI

Manjasetty, B.A., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2007) J Young Investig 17:

Released	2006-08-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	L-arabinose isomerase (protein)
Unique Ligands	MN

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3ITG \| pdb_00003itg	Download File View File

Structure the proline utilization A proline dehydrogenase domain (PutA86-630) inactivated with N-propargylglycine

Tanner, J.J.

(2010) Biochemistry 49: 560-569

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli K-12
Macromolecule	Bifunctional protein putA (protein)
Unique Ligands	FDA

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3RBM \| pdb_00003rbm	Download File View File

Crystal structure of Plasmodium vivax geranylgeranylpyrophosphate synthase complexed with BPH -703

Liu, Y.L., No, J.H., Oldfield, E.

(2012) Proc Natl Acad Sci U S A 109: 4058-4063

Released	2012-02-29
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Plasmodium vivax Sal-1
Macromolecule	Farnesyl pyrophosphate synthase (protein)
Unique Ligands	B73, MG, SO4

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3RYW \| pdb_00003ryw	Download File View File

Crystal structure of P. vivax geranylgeranyl diphosphate synthase complexed with BPH-811

No, J.H., Liu, Y.-L., Zhang, Y., Oldfield, E.

(2012) Proc Natl Acad Sci U S A 109: 4058-4063

Released	2012-05-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Plasmodium vivax Sal-1
Macromolecule	Farnesyl pyrophosphate synthase (protein)
Unique Ligands	K9H, MG, SO4

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3SGT \| pdb_00003sgt	Download File View File

Crystal Structure of E. coli undecaprenyl pyrophosphate synthase in complex with BPH-1299

Cao, R., Liu, Y.-L., Oldfield, E.

(2013) Proc Natl Acad Sci U S A 110: 123-128

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli O6
Macromolecule	Undecaprenyl pyrophosphate synthase (protein)
Unique Ligands	P09

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3SGV \| pdb_00003sgv	Download File View File

Crystal Structure of E. coli undecaprenyl pyrophosphate synthase in complex with BPH-1290

Cao, R., Liu, Y.-L., Oldfield, E.

(2013) Proc Natl Acad Sci U S A 110: 123-128

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Escherichia coli K-12
Macromolecule	Undecaprenyl pyrophosphate synthase (protein)
Unique Ligands	2BJ

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3SGX \| pdb_00003sgx	Download File View File

Crystal Structure of E. coli undecaprenyl pyrophosphate synthase in complex with BPH-1100

Cao, R., Liu, Y.-L., Oldfield, E.

(2013) Proc Natl Acad Sci U S A 110: 123-128

Released	2012-12-19
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Escherichia coli K-12
Macromolecule	Undecaprenyl pyrophosphate synthase (protein)
Unique Ligands	0FW

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3SH0 \| pdb_00003sh0	Download File View File

Crystal Structure of E. coli undecaprenyl pyrophosphate synthase in complex with BPH-1065

Cao, R., Liu, Y.-L., Oldfield, E.

(2013) Proc Natl Acad Sci U S A 110: 123-128

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Escherichia coli K-12
Macromolecule	Undecaprenyl pyrophosphate synthase (protein)
Unique Ligands	SAX

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3SHY \| pdb_00003shy	Download File View File

Crystal structure of the PDE5A1 catalytic domain in complex with novel inhibitors

Chen, T.T., Chen, T., Xu, Y.C.

(2011) J Med Chem 54: 5607-5611

Released	2011-08-24
Method	X-RAY DIFFRACTION 2.647 Å
Organisms	Homo sapiens
Macromolecule	cGMP-specific 3',5'-cyclic phosphodiesterase (protein)
Unique Ligands	5FO, MG, ZN

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3SHZ \| pdb_00003shz	Download File View File

Crystal structure of the PDE5A1 catalytic domain in complex with novel inhibitors

Chen, T.T., Chen, T., Xu, Y.C.

(2011) J Med Chem 54: 5607-5611

Released	2011-08-24
Method	X-RAY DIFFRACTION 2.449 Å
Organisms	Homo sapiens
Macromolecule	cGMP-specific 3',5'-cyclic phosphodiesterase (protein)
Unique Ligands	5CO, MG, ZN

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3SIE \| pdb_00003sie	Download File View File

Crystal structure of the PDE5A1 catalytic domain in complex with novel inhibitors

Chen, T.T., Chen, T., Xu, Y.C.

(2011) J Med Chem 54: 5607-5611

Released	2011-08-24
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens
Macromolecule	cGMP-specific 3',5'-cyclic phosphodiesterase (protein)
Unique Ligands	5BO

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3TFN \| pdb_00003tfn	Download File View File

Crystal structure of dehydrosqualene synthase (crtm) from s. aureus complexed with bph-1183

Lin, F.-Y., Liu, Y.-L., Oldfield, E.

(2012) ChemMedChem 7: 561-564

Released	2012-04-04
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Staphylococcus aureus
Macromolecule	Dehydrosqualene synthase (protein)
Unique Ligands	2CJ, MG

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3TFP \| pdb_00003tfp	Download File View File

Crystal Structure of Dehydrosqualene Synthase (CrtM) from S. aureus Complexed with BPH-1162

Lin, F.-Y., Liu, Y.-L., Zhang, Y., Oldfield, E.

(2012) ChemMedChem 7: 561-564

Released	2012-04-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus aureus
Macromolecule	Dehydrosqualene synthase (protein)
Unique Ligands	03L, MG

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3TFV \| pdb_00003tfv	Download File View File

Crystal structure of dehydrosqualene synthase (crtm) from s. aureus complexed with bph-1154

Lin, F.-Y., Zhang, Y., Liu, Y.-L., Oldfield, E.

(2012) ChemMedChem 7: 561-564

Released	2012-04-04
Method	X-RAY DIFFRACTION 3 Å
Organisms	Staphylococcus aureus
Macromolecule	Dehydrosqualene synthase (protein)
Unique Ligands	2CN, MG

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3TH8 \| pdb_00003th8	Download File View File

Structure of E. coli undecaprenyl diphosphate synthase complexed with BPH-1063

Cao, R., Zhu, W., Zhang, Y., Oldfield, E.

(2012) ACS Med Chem Lett 3: 402-406

Released	2012-07-04
Method	X-RAY DIFFRACTION 2.114 Å
Organisms	Escherichia coli K-12
Macromolecule	Undecaprenyl pyrophosphate synthase (protein)
Unique Ligands	TH9

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3VPM \| pdb_00003vpm	Download File View File

Crystal structure of human ribonucleotide reductase subunit M2 (hRRM2) mutant

Chen, X., Xu, Z., Liu, H., Zhang, L., Chen, B., Zhu, L., Yang, C., Zhu, W., Shao, J.

To be published

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Ribonucleoside-diphosphate reductase subunit M2 (protein)
Unique Ligands	FE, MG

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3VPN \| pdb_00003vpn	Download File View File

Crystal structure of human ribonucleotide reductase subunit M2 (hRRM2) mutant

Chen, X., Xu, Z., Liu, H., Zhang, L., Chen, B., Zhu, L., Yang, C., Zhu, W., Shao, J.

To be published

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Ribonucleoside-diphosphate reductase subunit M2 (protein)
Unique Ligands	FE, MG

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3VPO \| pdb_00003vpo	Download File View File

Crystal structure of human ribonucleotide reductase subunit M2 (hRRM2) mutant

Chen, X., Xu, Z., Liu, H., Zhang, L., Chen, B., Zhu, L., Yang, C., Zhu, W., Shao, J.

To be published

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Ribonucleoside-diphosphate reductase subunit M2 (protein)
Unique Ligands	FE, MG

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3WYI \| pdb_00003wyi	Download File View File

Structure of S. aureus undecaprenyl diphosphate synthase

Gao, J., Ko, T.P., Huang, C.H., Oldfield, E., Guo, R.T.

(2015) J Med Chem 58: 1215-1227

Released	2015-02-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus aureus
Macromolecule	Isoprenyl transferase (protein)
Unique Ligands	MG

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3WYJ \| pdb_00003wyj	Download File View File

Structure of E. coli undecaprenyl diphosphate synthase in complex with BPH-789

Gao, J., Ko, T.P., Huang, C.H., Oldfield, E., Guo, R.T.

(2015) J Med Chem 58: 1215-1227

Released	2015-02-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) (protein)
Unique Ligands	H78

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4DBF \| pdb_00004dbf	Download File View File

Crystal structures of Cg1458

Ran, T.T., Xu, D.Q., Wang, W.W., Gao, Y.Y., Wang, M.T.

(2013) Biochem J 449: 51-60

Released	2012-11-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Corynebacterium glutamicum
Macromolecule	2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE (protein)
Unique Ligands	MG

1 to 25 of 141 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1J77 | pdb_00001j77

1PFT | pdb_00001pft

2FZM | pdb_00002fzm

2FZN | pdb_00002fzn

2HXG | pdb_00002hxg

3ITG | pdb_00003itg

3RBM | pdb_00003rbm

3RYW | pdb_00003ryw

3SGT | pdb_00003sgt

3SGV | pdb_00003sgv

3SGX | pdb_00003sgx

3SH0 | pdb_00003sh0

3SHY | pdb_00003shy

3SHZ | pdb_00003shz

3SIE | pdb_00003sie

3TFN | pdb_00003tfn

3TFP | pdb_00003tfp

3TFV | pdb_00003tfv

3TH8 | pdb_00003th8

3VPM | pdb_00003vpm

3VPN | pdb_00003vpn

3VPO | pdb_00003vpo

3WYI | pdb_00003wyi

3WYJ | pdb_00003wyj

4DBF | pdb_00004dbf