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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yang, L."

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Search Summary

This query matches 363 Structures.

Refinements

Structure Determination Methodology

experimental (363)

Scientific Name of Source Organism

	Homo sapiens (161)
	synthetic construct (32)
	Mus musculus (21)
	Gallus gallus (19)
	Sus scrofa (17)
	Streptococcus pneumoniae TIGR4 (15)
	Pseudomonas aeruginosa (14)
	Rattus norvegicus (14)
	Corynebacterium glutamicum ATCC 13032 (12)
	Human betacoronavirus 2c EMC/2012 (12)

More...

Taxonomy

	Eukaryota (211)
	Bacteria (131)
	Riboviria (57)
	other sequences (32)
	Duplodnaviria (13)
	Monodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (262)
	ELECTRON MICROSCOPY (93)
	SOLUTION NMR (8)

Polymer Entity Type

	Protein (362)
	RNA (17)
	DNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (20)
	1.5 - 2.0 (98)
	2.0 - 2.5 (91)
	2.5 - 3.0 (73)
	3.0 - 3.5 (44)
	3.5 - 4.0 (23)
	4.0 - 4.5 (3)
	> 4.5 (3)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (18)
	2015 - 2019 (91)
	2020 - 2024 (234)
	2025 - 2029 (18)

Enzyme Classification Name

	Hydrolases (122)
	Transferases (76)
	Oxidoreductases (23)
	Isomerases (11)
	Lyases (5)
	Translocases (4)
	Ligases (2)

Membrane Protein Annotation

	PDBTM (49)
	mpstruc (23)
	MemProtMD (21)
	OPM (17)

Symmetry Type

	Asymmetric (239)
	Cyclic (82)
	Icosahedral (24)
	Dihedral (17)
	Helical (1)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (23)
	Alpha and beta proteins (a+b) (21)
	All beta proteins (17)
	Artifacts (18)
	Small proteins (12)
	All alpha proteins (8)
	Coiled coil proteins (2)

AllSelected

1 to 25 of 363 Structures

Page 1 of 15

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2LS2 \| pdb_00002ls2	Download File View File

1H Chemical Shift Assignments for the first transmembrane domain from human copper transport 1

Yang, L., Huang, Z., Li, F.

To be published

Released	2012-06-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	High affinity copper uptake protein 1 (protein)

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2LS3 \| pdb_00002ls3	Download File View File

1H Chemical Shift Assignments for the secondary transmembrane domain from human copper transport 1

Yang, L., Huang, Z., Li, F.

To be published

Released	2012-06-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	High affinity copper uptake protein 1 (protein)

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2LS4 \| pdb_00002ls4	Download File View File

1H Chemical Shift Assignments for the third transmembrane domain from the human copper transport 1

Yang, L., Huang, Z., Li, F.

To be published

Released	2012-06-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	High affinity copper uptake protein 1 (protein)

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2WFL \| pdb_00002wfl	Download File View File

Crystal structure of polyneuridine aldehyde esterase

Yang, L., Hill, M., Panjikar, S., Wang, M., Stoeckigt, J.

(2009) Angew Chem Int Ed Engl 48: 5211

Released	2009-08-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rauvolfia serpentina
Macromolecule	POLYNEURIDINE-ALDEHYDE ESTERASE (protein)
Unique Ligands	SO4

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2WFM \| pdb_00002wfm	Download File View File

Crystal structure of polyneuridine aldehyde esterase mutant (H244A)

Yang, L., Hill, M., Panjikar, S., Wang, M., Stoeckigt, J.

(2009) Angew Chem Int Ed Engl 48: 5211

Released	2010-04-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rauvolfia serpentina
Macromolecule	POLYNEURIDINE ALDEHYDE ESTERASE (protein)

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3GZJ \| pdb_00003gzj	Download File View File

Crystal Structure of Polyneuridine Aldehyde Esterase Complexed with 16-epi-Vellosimine

Yang, L., Hill, M., Wang, M., Panjikar, S., Stoeckigt, J.

(2009) Angew Chem Int Ed Engl 48: 5211-5213

Released	2009-08-18
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Rauvolfia serpentina
Macromolecule	Polyneuridine-aldehyde esterase (protein)
Unique Ligands	EVS

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3P4Z \| pdb_00003p4z	Download File View File

Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme

Wei, H., Wang, Z., Zhang, J., House, S., Gao, Y.-G., Yang, L., Robinson, H., Tan, L.H., Xing, H., Hou, C., Robertson, I.M., Zuo, J.-M., Lu, Y.

(2011) Nat Nanotechnol 6: 93-97

Released	2011-02-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	AU, AU3, CL

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3P64 \| pdb_00003p64	Download File View File

Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme

Wei, H., Wang, Z., Zhang, J., House, S., Gao, Y.-G., Yang, L., Robinson, H., Tan, L.H., Xing, H., Hou, C., Robertson, I.M., Zuo, J.-M., Lu, Y.

(2011) Nat Nanotechnol 6: 93-97

Released	2011-02-09
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	AU, AU3, CL

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3P65 \| pdb_00003p65	Download File View File

Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme

Wei, H., Wang, Z., Zhang, J., House, S., Gao, Y.-G., Yang, L., Robinson, H., Tan, L.H., Xing, H., Hou, C., Robertson, I.M., Zuo, J.-M., Lu, Y.

(2011) Nat Nanotechnol 6: 93-97

Released	2011-02-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	AU, AU3, CL

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3P66 \| pdb_00003p66	Download File View File

Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme

Wei, H., Wang, Z., Zhang, J., House, S., Gao, Y.-G., Yang, L., Robinson, H., Tan, L.H., Xing, H., Hou, C., Robertson, I.M., Zuo, J.-M., Lu, Y.

(2011) Nat Nanotechnol 6: 93-97

Released	2011-02-09
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	AU3

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3P68 \| pdb_00003p68	Download File View File

Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme

Wei, H., Wang, Z., Zhang, J., House, S., Gao, Y.-G., Yang, L., Robinson, H., Tan, L.H., Xing, H., Hou, C., Robertson, I.M., Zuo, J.-M., Lu, Y.

(2011) Nat Nanotechnol 6: 93-97

Released	2011-02-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	AU3

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3UPR \| pdb_00003upr	Download File View File

HLA-B*57:01 complexed to pep-V and Abacavir

Pompeu, Y.A., Ostrov, D.A.

(2012) Proc Natl Acad Sci U S A 109: 9959-9964

Released	2012-06-13
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-57 alpha chain (protein) pep-V (protein)
Unique Ligands	1KX, CL

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4C1W \| pdb_00004c1w	Download File View File

Carbohydrate binding domain from Streptococcus pneumoniae NanA sialidase complexed with 3'-sialyllactose

Yang, L., Connaris, H., Potter, J.A., Taylor, G.L.

(2014) Proc Natl Acad Sci U S A 111: 6401

Released	2014-08-27
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Streptococcus pneumoniae
Macromolecule	NEURAMINIDASE (protein)
Unique Ligands	TRS
Unique branched monosaccharides	GAL, GLC, SIA

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4C1X \| pdb_00004c1x	Download File View File

Carbohydrate binding domain from Streptococcus pneumoniae NanA sialidase complexed with 6'-sialyllactose

Yang, L., Connaris, H., Potter, J.A., Taylor, G.L.

(2015) BMC Struct Biol 15: 15

Released	2014-09-10
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Streptococcus pneumoniae
Macromolecule	SIALIDASE A (protein)
Unique Ligands	TRS
Unique branched monosaccharides	BGC, GAL, SIA

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4IAQ \| pdb_00004iaq	Download File View File

Crystal structure of the chimeric protein of 5-HT1B-BRIL in complex with dihydroergotamine (PSI Community Target)

Wang, C., Jiang, Y., Ma, J., Wu, H., Wacker, D., Katritch, V., Han, G.W., Liu, W., Huang, X., Vardy, E., McCorvy, J.D., Gao, X., Zhou, E.X., Melcher, K., Zhang, C., Bai, F., Yang, H., Yang, L., Jiang, H., Roth, B.L., Cherezov, V., Stevens, R.C., Xu, H.E., GPCR Network (GPCR)

(2013) Science 340: 610-614

Released	2013-03-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Chimera protein of human 5-hydroxytryptamine receptor 1B and E. Coli soluble cytochrome b562 (protein)
Unique Ligands	2GM

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4IAR \| pdb_00004iar	Download File View File

Crystal structure of the chimeric protein of 5-HT1B-BRIL in complex with ergotamine (PSI Community Target)

(2013) Science 340: 610-614

Released	2013-03-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Chimera protein of human 5-hydroxytryptamine receptor 1B and E. Coli soluble cytochrome b562 (protein)
Unique Ligands	ERM, OLB

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4JZR \| pdb_00004jzr	Download File View File

Structure of Prolyl Hydroxylase Domain-containing Protein (PHD) with Inhibitors

Ma, Y., Yang, L.

(2013) Bioorg Med Chem 21: 6349-6358

Released	2013-10-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Egl nine homolog 1 (protein)
Unique Ligands	4JR, EDO, NI

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4K9R \| pdb_00004k9r	Download File View File

Spore photoproduct lyase Y98F mutant

Yang, L., Nelson, R.S., Benjdia, A., Lin, G., Telser, J., Stoll, S., Schlichting, I., Li, L.

(2013) Biochemistry 52: 3041-3050

Released	2013-05-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Spore photoproduct lyase (protein)
Unique Ligands	EEM, SF4, SO4

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4NIE \| pdb_00004nie	Download File View File

Crystal structure of the orphan nuclear receptor ROR(gamma)t ligand-binding domain in complex with small molecule ligand

Ma, Y.L., Yang, L.Q.

(2014) ACS Med Chem Lett 5: 65-68

Released	2013-12-11
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor ROR-gamma (protein) Peptide from Nuclear receptor coactivator 2 (protein)
Unique Ligands	DMX, NBH