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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wu, J.-W."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Homo sapiens (9)
	Rattus norvegicus (5)
	Pseudoalteromonas sp. SM9913 (3)
	Drosophila melanogaster (2)
	Gallus gallus (1)
	Saccharomyces cerevisiae (1)
	Schizosaccharomyces pombe (1)
	Synechocystis sp. PCC 6803 (1)

Taxonomy

	Eukaryota (16)
	Bacteria (4)
	Eukaryota (eukaryotes) (1)

Experimental Method

X-RAY DIFFRACTION (20)

Polymer Entity Type

	Protein (20)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (7)
	2.5 - 3.0 (8)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (2)
	2010 - 2014 (12)
	2015 - 2019 (1)

Enzyme Classification Name

	Transferases (11)
	Hydrolases (6)
	Oxidoreductases (1)
	Translocases (1)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (18)
	Cyclic (4)

SCOP Classification

	Alpha and beta proteins (a+b) (11)
	Small proteins (1)
	Artifacts (3)
	All beta proteins (1)

AllSelected

1 to 20 of 20 Structures

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1MR1 \| pdb_00001mr1	Download File View File

Crystal Structure of a Smad4-Ski Complex

Wu, J.-W., Krawitz, A.R., Chai, J., Li, W., Zhang, F., Luo, K., Shi, Y.

(2002) Cell 111: 357-367

Released	2003-01-21
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	Mothers against decapentaplegic homolog 4 (protein) Ski oncogene (protein)
Unique Ligands	ZN

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1NB8 \| pdb_00001nb8	Download File View File

Structure of the catalytic domain of USP7 (HAUSP)

Hu, M., Li, P., Li, M., Li, W., Yao, T., Wu, J.-W., Gu, W., Cohen, R.E., Shi, Y.

(2002) Cell 111: 1041-1054

Released	2003-01-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)

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1NBF \| pdb_00001nbf	Download File View File

Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde

Hu, M., Li, P., Li, M., Li, W., Yao, T., Wu, J.-W., Gu, W., Cohen, R.E., Shi, Y.

(2002) Cell 111: 1041-1054

Released	2003-01-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin aldehyde (protein) Ubiquitin carboxyl-terminal hydrolase 7 (protein)

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1OZJ \| pdb_00001ozj	Download File View File

Crystal structure of Smad3-MH1 bound to DNA at 2.4 A resolution

Chai, J., Wu, J.-W., Yan, N., Massague, J., Pavletich, N.P., Shi, Y.

(2003) J Biological Chem 278: 20327-20331

Released	2004-03-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	SMAD 3 (protein) Smad binding element (nucleic acid)
Unique Ligands	ZN

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1Q4Q \| pdb_00001q4q	Download File View File

Crystal structure of a DIAP1-Dronc complex

Chai, J., Yan, N., Shi, Y.

(2003) Nat Struct Biol 10: 892-898

Released	2003-11-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Drosophila melanogaster
Macromolecule	Apoptosis 1 inhibitor (protein) Nedd2-like caspase CG8091-PA (protein)
Unique Ligands	ZN

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3DAE \| pdb_00003dae	Download File View File

Crystal structure of phosphorylated SNF1 kinase domain

Zheng, L.-S., Chen, L., Jiao, Z.-H., Wu, J.-W.

(2009) Nature 459: 1146-1149

Released	2009-06-02
Method	X-RAY DIFFRACTION 2.899 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Carbon catabolite-derepressing protein kinase (protein)

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3H4J \| pdb_00003h4j	Download File View File

crystal structure of pombe AMPK KDAID fragment

Chen, L., Jiao, Z.-H., Zheng, L.-S., Zhang, Y.-Y., Xie, S.-T., Wang, Z.-X., Wu, J.-W.

(2009) Nature 459: 1122-1125

Released	2009-06-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	SNF1-like protein kinase ssp2 (protein)

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3NPH \| pdb_00003nph	Download File View File

Crystal structure of the pfam00427 domain from Synechocystis sp. PCC 6803

Gao, X., Chen, L., Wu, J.-W., Zhang, Y.-Z.

(2011) Mol Microbiol 82: 698-705

Released	2011-06-29
Method	X-RAY DIFFRACTION 1.849 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 2 (protein)

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3NQX \| pdb_00003nqx	Download File View File

Crystal structure of vibriolysin MCP-02 mature enzyme, a zinc metalloprotease from M4 family

Gao, X., Wang, J., Wu, J.-W., Zhang, Y.-Z.

(2010) Proc Natl Acad Sci U S A 107: 17569-17574

Released	2010-10-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudoalteromonas sp. SM9913
Macromolecule	Secreted metalloprotease Mcp02 (protein)
Unique Ligands	CA, ZN

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3NQY \| pdb_00003nqy	Download File View File

Crystal structure of the autoprocessed complex of Vibriolysin MCP-02 with a single point mutation E346A

Gao, X., Wang, J., Wu, J.-W., Zhang, Y.-Z.

(2010) Proc Natl Acad Sci U S A 107: 17569-17574

Released	2010-10-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Pseudoalteromonas sp. SM9913
Macromolecule	Secreted metalloprotease Mcp02 (protein)
Unique Ligands	CA, ZN

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3NQZ \| pdb_00003nqz	Download File View File

Crystal structure of the autoprocessed Vibriolysin MCP-02 with E369A mutation

Gao, X., Wang, J., Chen, L., Wu, J.-W., Zhang, Y.-Z.

(2010) Proc Natl Acad Sci U S A 107: 17569-17574

Released	2010-10-06
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Pseudoalteromonas sp. SM9913
Macromolecule	Secreted metalloprotease Mcp02 (protein)
Unique Ligands	CA, ZN

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3Q4Z \| pdb_00003q4z	Download File View File

Structure of unphosphorylated PAK1 kinase domain

Wang, J., Wu, J.-W., Wang, Z.-X.

(2011) Structure 19: 1752-1761

Released	2011-12-21
Method	X-RAY DIFFRACTION 1.887 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase PAK 1 (protein)
Unique Ligands	ANP, MG

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3Q52 \| pdb_00003q52	Download File View File

Structure of phosphorylated PAK1 kinase domain

Wang, J., Wu, J.-W., Wang, Z.-X.

(2011) Structure 19: 1752-1761

Released	2011-12-21
Method	X-RAY DIFFRACTION 1.801 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase PAK 1 (protein)

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3Q53 \| pdb_00003q53	Download File View File

Structure of phosphorylated PAK1 kinase domain in complex with ATP

Wang, J., Wu, J.-W., Wang, Z.-X.

(2011) Structure 19: 1752-1761

Released	2011-12-21
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase PAK 1 (protein)
Unique Ligands	ATP, MG

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4EAG \| pdb_00004eag	Download File View File

Co-crystal structure of an chimeric AMPK core with ATP

Chen, L., Wang, J., Zhang, Y.-Y., Yan, S.F., Neumann, D., Schlattner, U., Wang, Z.-X., Wu, J.-W.

(2012) Nat Struct Mol Biol 19: 716-718

Released	2012-06-06
Method	X-RAY DIFFRACTION 2.701 Å
Organisms	Drosophila melanogaster Rattus norvegicus
Macromolecule	5'-AMP-activated protein kinase subunit beta-1 (protein) 5'-AMP-activated protein kinase subunit gamma-1 (protein) EG:132E8.2 protein (protein)
Unique Ligands	ATP, TAM

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4EAI \| pdb_00004eai	Download File View File

Co-crystal structure of an AMPK core with AMP

Chen, L., Wang, J., Zhang, Y.-Y., Yan, S.F., Neumann, D., Schlattner, U., Wang, Z.-X., Wu, J.-W.

(2012) Nat Struct Mol Biol 19: 716-718

Released	2012-06-06
Method	X-RAY DIFFRACTION 2.285 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	5'-AMP-activated protein kinase catalytic subunit alpha-1 (protein) 5'-AMP-activated protein kinase subunit beta-2 (protein) 5'-AMP-activated protein kinase subunit gamma-1 (protein)
Unique Ligands	AMP

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4EAJ \| pdb_00004eaj	Download File View File

Co-crystal of AMPK core with AMP soaked with ATP

Chen, L., Wang, J., Zhang, Y.-Y., Yan, S.F., Neumann, D., Schlattner, U., Wang, Z.-X., Wu, J.-W.

(2012) Nat Struct Mol Biol 19: 716-718

Released	2012-06-06
Method	X-RAY DIFFRACTION 2.609 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	5'-AMP-activated protein kinase catalytic subunit alpha-1 (protein) 5'-AMP-activated protein kinase subunit beta-2 (protein) 5'-AMP-activated protein kinase subunit gamma-1 (protein)
Unique Ligands	AMP, ATP

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4EAK \| pdb_00004eak	Download File View File

Co-crystal structure of an AMPK core with ATP

Chen, L., Wang, J., Zhang, Y.-Y., Yan, S.F., Neumann, D., Schlattner, U., Wang, Z.-X., Wu, J.-W.

(2012) Nat Struct Mol Biol 19: 716-718

Released	2012-06-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	5'-AMP-activated protein kinase catalytic subunit alpha-1 (protein) 5'-AMP-activated protein kinase subunit beta-1 (protein) 5'-AMP-activated protein kinase subunit gamma-1 (protein)
Unique Ligands	ATP, TAM

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4EAL \| pdb_00004eal	Download File View File

Co-crystal of AMPK core with ATP soaked with AMP

Chen, L., Wang, J., Zhang, Y.-Y., Yan, S.F., Neumann, D., Schlattner, U., Wang, Z.-X., Wu, J.-W.

(2012) Nat Struct Mol Biol 19: 716-718

Released	2012-06-06
Method	X-RAY DIFFRACTION 2.506 Å
Organisms	Rattus norvegicus
Macromolecule	5'-AMP-activated protein kinase catalytic subunit alpha-1 (protein) 5'-AMP-activated protein kinase subunit beta-1 (protein) 5'-AMP-activated protein kinase subunit gamma-1 (protein)
Unique Ligands	AMP

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4U3F \| pdb_00004u3f	Download File View File

Cytochrome bc1 complex from chicken with designed inhibitor bound

Huang, L.-S., Zhu, X.-L., Yang, G.F., Berry, E.A.

(2015) Sci Rep 5:

Released	2015-07-29
Method	X-RAY DIFFRACTION 3.2312 Å
Organisms	Gallus gallus
Macromolecule	Unique protein chains: 10
Unique Ligands	BOG, CDL, FES, GOL, HEC, HEM, MES, PEE, U10, Y52

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1MR1 | pdb_00001mr1

Crystal Structure of a Smad4-Ski Complex

1NB8 | pdb_00001nb8

Structure of the catalytic domain of USP7 (HAUSP)

1NBF | pdb_00001nbf

Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde

1OZJ | pdb_00001ozj

Crystal structure of Smad3-MH1 bound to DNA at 2.4 A resolution

1Q4Q | pdb_00001q4q

Crystal structure of a DIAP1-Dronc complex

3DAE | pdb_00003dae

Crystal structure of phosphorylated SNF1 kinase domain

3H4J | pdb_00003h4j

crystal structure of pombe AMPK KDAID fragment

3NPH | pdb_00003nph

Crystal structure of the pfam00427 domain from Synechocystis sp. PCC 6803

3NQX | pdb_00003nqx

Crystal structure of vibriolysin MCP-02 mature enzyme, a zinc metalloprotease from M4 family

3NQY | pdb_00003nqy

Crystal structure of the autoprocessed complex of Vibriolysin MCP-02 with a single point mutation E346A

3NQZ | pdb_00003nqz

Crystal structure of the autoprocessed Vibriolysin MCP-02 with E369A mutation

3Q4Z | pdb_00003q4z

Structure of unphosphorylated PAK1 kinase domain

3Q52 | pdb_00003q52

Structure of phosphorylated PAK1 kinase domain

3Q53 | pdb_00003q53

Structure of phosphorylated PAK1 kinase domain in complex with ATP

4EAG | pdb_00004eag

Co-crystal structure of an chimeric AMPK core with ATP

4EAI | pdb_00004eai

Co-crystal structure of an AMPK core with AMP

4EAJ | pdb_00004eaj

Co-crystal of AMPK core with AMP soaked with ATP

4EAK | pdb_00004eak

Co-crystal structure of an AMPK core with ATP

4EAL | pdb_00004eal

Co-crystal of AMPK core with ATP soaked with AMP

4U3F | pdb_00004u3f

Cytochrome bc1 complex from chicken with designed inhibitor bound

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1MR1 | pdb_00001mr1

1NB8 | pdb_00001nb8

1NBF | pdb_00001nbf

1OZJ | pdb_00001ozj

1Q4Q | pdb_00001q4q

3DAE | pdb_00003dae

3H4J | pdb_00003h4j

3NPH | pdb_00003nph

3NQX | pdb_00003nqx

3NQY | pdb_00003nqy

3NQZ | pdb_00003nqz

3Q4Z | pdb_00003q4z

3Q52 | pdb_00003q52

3Q53 | pdb_00003q53

4EAG | pdb_00004eag

4EAI | pdb_00004eai

4EAJ | pdb_00004eaj

4EAK | pdb_00004eak

4EAL | pdb_00004eal

4U3F | pdb_00004u3f