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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 191 Structures.

Refinements

Structure Determination Methodology

experimental (191)

Scientific Name of Source Organism

	Homo sapiens (91)
	Escherichia coli (10)
	Escherichia coli K-12 (10)
	Pteropus alecto (9)
	Severe acute respiratory syndrome coronavirus 2 (9)
	Arabidopsis thaliana (8)
	Tetrahymena thermophila (8)
	Sus scrofa (6)
	Aspergillus novofumigatus (5)
	Mus musculus (5)

More...

Taxonomy

	Eukaryota (158)
	Bacteria (40)
	Riboviria (23)
	other sequences (5)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (103)
	ELECTRON MICROSCOPY (88)

Polymer Entity Type

	Protein (183)
	RNA (12)

Refinement Resolution (Å)

	1.0 - 1.5 (12)
	1.5 - 2.0 (34)
	2.0 - 2.5 (38)
	2.5 - 3.0 (41)
	3.0 - 3.5 (37)
	3.5 - 4.0 (20)
	4.0 - 4.5 (6)
	> 4.5 (3)

Release Date

	2010 - 2014 (9)
	2015 - 2019 (49)
	2020 - 2024 (127)
	2025 - 2029 (6)

Enzyme Classification Name

	Hydrolases (54)
	Transferases (42)
	Oxidoreductases (19)
	Translocases (9)
	Isomerases (7)
	Ligases (1)

Membrane Protein Annotation

	mpstruc (37)
	PDBTM (36)
	OPM (26)
	MemProtMD (18)

Symmetry Type

	Asymmetric (123)
	Cyclic (39)
	Dihedral (25)

SCOP Classification

	Membrane and cell surface proteins and peptides (1)
	Alpha and beta proteins (a/b) (16)
	Artifacts (12)
	All alpha proteins (7)
	All beta proteins (6)
	Alpha and beta proteins (a+b) (6)
	Small proteins (3)

AllSelected

1 to 25 of 191 Structures

Page 1 of 8

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3SJL \| pdb_00003sjl	Download File View File

Crystal Structure of the P107S-MauG/pre-Methylamine Dehydrogenase Complex

Jensen, L.M.R., Wilmot, C.M.

(2012) Biochemistry 51: 1598-1606

Released	2012-05-02
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein mauG (protein)
Unique Ligands	CA, EDO, HEC, MES, NA, PEG

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3SLE \| pdb_00003sle	Download File View File

Crystal Structure of the P107C-MauG/pre-Methylamine Dehydrogenase Complex

Yukl, E.T., Wilmot, C.M.

(2012) Biochemistry 51: 1598-1606

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	ACT, CA, EDO, HEC

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3SVW \| pdb_00003svw	Download File View File

Crystal Structure of the P107V-MauG/pre-Methylamine Dehydrogenase Complex

Jensen, L.M.R., Wilmot, C.M.

(2012) Biochemistry 51: 1598-1606

Released	2012-05-02
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	ACT, CA, EDO, HEC, MES, NA, PEG, PGE

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3TPX \| pdb_00003tpx	Download File View File

Crystal structure of human MDM2 in complex with a trifluoromethylated D-peptide inhibitor

Wu, X., Pazgier, M.

(2012) J Med Chem 55: 6237-6241

Released	2012-06-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	D-peptide inhibitor DPMI-delta (protein) E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	ACT, CL, SO4

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3UIM \| pdb_00003uim	Download File View File

Structural basis for the impact of phosphorylation on plant receptor-like kinase BAK1 activation

Lou, Z.Y., Yan, L.M., Ma, Y.Y.

(2012) Cell Res 22: 1304-1308

Released	2012-05-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Arabidopsis thaliana
Macromolecule	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 (protein)
Unique Ligands	ANP

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4IX3 \| pdb_00004ix3	Download File View File

Crystal structure of a Stt7 homolog from Micromonas algae

Guo, J., Wei, X., Li, M., Pan, X., Chang, W., Liu, Z.

(2013) Protein Cell 4: 607-619

Released	2013-10-02
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Micromonas commoda
Macromolecule	MsStt7d protein (protein)
Unique Ligands	MG

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4IX4 \| pdb_00004ix4	Download File View File

Crystal structure of a Stt7 homolog from Micromonas algae in complex with ADP

Guo, J., Wei, X., Li, M., Pan, X., Chang, W., Liu, Z.

(2013) Protein Cell 4: 607-619

Released	2013-10-02
Method	X-RAY DIFFRACTION 1.499 Å
Organisms	Micromonas commoda
Macromolecule	MsStt7d protein (protein)
Unique Ligands	ADP, MG

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4IX5 \| pdb_00004ix5	Download File View File

Crystal structure of a Stt7 homolog from Micromonas algae in complex with AMP-PNP

Guo, J., Wei, X., Li, M., Pan, X., Chang, W., Liu, Z.

(2013) Protein Cell 4: 607-619

Released	2013-10-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Micromonas commoda
Macromolecule	MsStt7d protein (protein)
Unique Ligands	ANP, MG

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4IX6 \| pdb_00004ix6	Download File View File

Crystal structure of a Stt7 homolog from Micromonas algae soaked with ATP

Guo, J., Wei, X., Li, M., Pan, X., Chang, W., Liu, Z.

(2013) Protein Cell 4: 607-619

Released	2013-10-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Micromonas commoda
Macromolecule	MsStt7d protein (protein)
Unique Ligands	ADP, MG

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4YZG \| pdb_00004yzg	Download File View File

Structure of the Arabidopsis TAP38/PPH1, a state-transition phosphatase responsible for dephosphorylation of LHCII

Wei, X.P., Guo, J.T., Li, M., Liu, Z.F.

(2015) Plant Cell 27: 1113-1127

Released	2015-04-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Arabidopsis thaliana
Macromolecule	Protein phosphatase 2C 57 (protein)
Unique Ligands	MN, SO4

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4YZH \| pdb_00004yzh	Download File View File

Structure of the Arabidopsis TAP38/PPH1 in complex with pLhcb1 phosphopeptide substrate

Wei, X.P., Guo, J.T., Li, M., Liu, Z.F.

(2015) Plant Cell 27: 1113-1127

Released	2015-04-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Arabidopsis thaliana
Macromolecule	Chlorophyll a-b binding protein 2, chloroplastic (protein) Protein phosphatase 2C 57 (protein)
Unique Ligands	MN

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5K9V \| pdb_00005k9v	Download File View File

Protein Tyrosine Phosphatase 1B (1-301), open state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.898 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, TRS

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5K9W \| pdb_00005k9w	Download File View File

Protein Tyrosine Phosphatase 1B (1-301) in complex with TCS401, closed state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-01
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, OTA, TRS

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5KA0 \| pdb_00005ka0	Download File View File

Protein Tyrosine Phosphatase 1B Delta helix 7, open state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.991 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, TRS

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5KA1 \| pdb_00005ka1	Download File View File

Protein Tyrosine Phosphatase 1B Delta helix 7 mutant in complex with TCS401, closed state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, DMS, GOL, OTA, TRS

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5KA2 \| pdb_00005ka2	Download File View File

Protein Tyrosine Phosphatase 1B YAYA (Y152A, Y153A) mutant, open state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-08
Method	X-RAY DIFFRACTION 2.071 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, TRS

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5KA3 \| pdb_00005ka3	Download File View File

Protein Tyrosine Phosphatase 1B YAYA (Y152A, Y153A) mutant in complex with TCS401, closed state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-08
Method	X-RAY DIFFRACTION 2.141 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, OTA, TRS

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5KA4 \| pdb_00005ka4	Download File View File

Protein Tyrosine Phosphatase 1B T178A mutant, open state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-08
Method	X-RAY DIFFRACTION 2.185 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)

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5KA7 \| pdb_00005ka7	Download File View File

Protein Tyrosine Phosphatase 1B T178A mutant in complex with TCS401, closed state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-08
Method	X-RAY DIFFRACTION 2.061 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, OTA, TRS

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5KA8 \| pdb_00005ka8	Download File View File

Protein Tyrosine Phosphatase 1B L192A mutant, open state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.971 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, TRS

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5KA9 \| pdb_00005ka9	Download File View File

Protein Tyrosine Phosphatase 1B L192A mutant in complex with TCS401, open state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-01
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, OTA, TRS

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5KAA \| pdb_00005kaa	Download File View File

Protein Tyrosine Phosphatase 1B Delta helix 7, P185G mutant, open state

Choy, M.S., Machado, L.E.S.F., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-08
Method	X-RAY DIFFRACTION 1.968 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, TRS

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5KAB \| pdb_00005kab	Download File View File

Protein Tyrosine Phosphatase 1B Delta helix 7, P185G mutant in complex with TCS401, open state

Choy, M.S., Machado, L.E.S.F., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-08
Method	X-RAY DIFFRACTION 1.968 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, OTA, TRS

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5KAC \| pdb_00005kac	Download File View File

Protein Tyrosine Phosphatase 1B P185G mutant, open state

Choy, M.S., Machado, L.E.S.F., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, TRS

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5KAD \| pdb_00005kad	Download File View File

Protein Tyrosine Phosphatase 1B N193A mutant in complex with TCS401, closed state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, OTA, TRS

1 to 25 of 191 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3SJL | pdb_00003sjl

3SLE | pdb_00003sle

3SVW | pdb_00003svw

3TPX | pdb_00003tpx

3UIM | pdb_00003uim

4IX3 | pdb_00004ix3

4IX4 | pdb_00004ix4

4IX5 | pdb_00004ix5

4IX6 | pdb_00004ix6

4YZG | pdb_00004yzg

4YZH | pdb_00004yzh

5K9V | pdb_00005k9v

5K9W | pdb_00005k9w

5KA0 | pdb_00005ka0

5KA1 | pdb_00005ka1

5KA2 | pdb_00005ka2

5KA3 | pdb_00005ka3

5KA4 | pdb_00005ka4

5KA7 | pdb_00005ka7

5KA8 | pdb_00005ka8

5KA9 | pdb_00005ka9

5KAA | pdb_00005kaa

5KAB | pdb_00005kab

5KAC | pdb_00005kac

5KAD | pdb_00005kad