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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wang, G.G."

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Search Summary

This query matches 37 Structures.

Refinements

Structure Determination Methodology

experimental (37)

Scientific Name of Source Organism

	Homo sapiens (32)
	Bacillus subtilis subsp. subtilis str. 168 (4)
	Bos taurus (3)
	Mus musculus (1)
	Streptomyces noursei (1)
	Xenopus laevis (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (32)
	Bacteria (5)
	Eukaryota (eukaryotes) (3)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (32)
	SOLUTION NMR (4)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (37)
	DNA (8)

Refinement Resolution (Å)

	1.5 - 2.0 (10)
	2.0 - 2.5 (5)
	2.5 - 3.0 (8)
	3.0 - 3.5 (10)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (6)
	2015 - 2019 (9)
	2020 - 2024 (19)

Enzyme Classification Name

	Transferases (22)
	Oxidoreductases (5)
	Isomerases (2)
	Lyases (2)
	Hydrolases (1)
	Ligases (1)

Symmetry Type

	Asymmetric (22)
	Cyclic (14)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (3)
	All beta proteins (2)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

AllSelected

1 to 25 of 37 Structures

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2KGG \| pdb_00002kgg	Download File View File

Solution Structure of JARID1A C-terminal PHD finger

Song, J., Wang, Z., Patel, D.J.

(2009) Nature 459: 847-851

Released	2009-05-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Histone demethylase JARID1A (protein)
Unique Ligands	ZN

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2KGI \| pdb_00002kgi	Download File View File

Solution structure of JARID1A C-terminal PHD finger in complex with H3(1-9)K4me3

Song, J., Wang, Z., Patel, D.J.

(2009) Nature 459: 847-851

Released	2009-05-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	H3(1-9)K4me3 (protein) Histone demethylase JARID1A (protein)
Unique Ligands	ZN

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2KU7 \| pdb_00002ku7	Download File View File

Solution structure of MLL1 PHD3-Cyp33 RRM chimeric protein

Song, J., Wang, Z., Patel, D.

(2010) Cell 141: 1183-1194

Released	2010-07-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	MLL1 PHD3-Cyp33 RRM chimeric protein (protein)

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2M0O \| pdb_00002m0o	Download File View File

The solution structure of human PHF1 in complex with H3K36me3

Song, J., Patel, D.J.

(2013) Mol Cell 49: 571-582

Released	2013-01-16
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	H3K36me3 peptide (protein) PHD finger protein 1 (protein)

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3GL6 \| pdb_00003gl6	Download File View File

Crystal structure of JARID1A-PHD3 complexed with H3(1-9)K4me3 peptide

Wang, Z., Song, J., Patel, D.J.

(2009) Nature 459: 847-851

Released	2009-05-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Histone H3 (protein) Histone demethylase JARID1A (protein)
Unique Ligands	ZN

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3LPY \| pdb_00003lpy	Download File View File

Crystal structure of the RRM domain of CyP33

Wang, Z., Patel, D.J.

(2010) Cell 141: 1183-1194

Released	2010-07-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase E (protein)
Unique Ligands	EPE, SO4

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3LQH \| pdb_00003lqh	Download File View File

Crystal structure of MLL1 PHD3-Bromo in the free form

Wang, Z., Patel, D.J.

(2010) Cell 141: 1183-1194

Released	2010-07-07
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase MLL (protein)
Unique Ligands	ZN

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3LQI \| pdb_00003lqi	Download File View File

Crystal structure of MLL1 PHD3-Bromo complexed with H3(1-9)K4me2 peptide

Wang, Z., Patel, D.J.

(2010) Cell 141: 1183-1194

Released	2010-07-07
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	Histone H3 (protein) MLL1 PHD3-Bromo (protein)
Unique Ligands	ZN

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3LQJ \| pdb_00003lqj	Download File View File

Crystal structure of MLL1 PHD3-Bromo complexed with H3(1-9)K4me3 peptide

Wang, Z., Patel, D.J.

(2010) Cell 141: 1183-1194

Released	2010-07-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Histone H3 (protein) MLL1 PHD3-Bromo (protein)
Unique Ligands	ZN

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4Q89 \| pdb_00004q89	Download File View File

Crystal Structure of the CotA native enzyme

Xie, T., Liu, Z.C., Wang, G.G.

To be published

Released	2015-04-29
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Spore coat protein A (protein)
Unique Ligands	CL, CU

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4Q8B \| pdb_00004q8b	Download File View File

The crystal structure of CotA laccase complexed with sinapic acid

Xie, T., Liu, Z.C., Wang, G.G.

To be published

Released	2015-04-29
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Spore coat protein A (protein)
Unique Ligands	CL, CU, MG, OXY, PGE, SXX

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5C6D \| pdb_00005c6d	Download File View File

Crystal structure of USP7 in complex with UHRF1

Zhang, Z.-M., Song, J.

(2015) Cell Rep 12: 1400-1406

Released	2015-09-09
Method	X-RAY DIFFRACTION 2.292 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase UHRF1 (protein) Ubiquitin carboxyl-terminal hydrolase 7 (protein)

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5IWX \| pdb_00005iwx	Download File View File

Crystal structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Bacillus subtitis

Liu, Z.C., Jin, Y., Wang, G.G.

(2018) Biosci Rep

Released	2017-03-29
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	MG

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5IWY \| pdb_00005iwy	Download File View File

Crystal structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Bacillus subtitis complexed with CMP and Mg2+

Liu, Z.C., Jin, Y., Wang, G.G.

(2018) Biosci Rep

Released	2017-03-29
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	C5P, MG

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5YX2 \| pdb_00005yx2	Download File View File

Crystal structure of DNMT3A-DNMT3L in complex with DNA containing two CpG sites

Zhang, Z.M., Song, J.

(2018) Nature 554: 387-391

Released	2018-01-31
Method	X-RAY DIFFRACTION 2.653 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA (cytosine-5)-methyltransferase 3-like (protein) DNA (cytosine-5)-methyltransferase 3A (protein) DNA (25-MER) (nucleic acid)
Unique Ligands	GOL, SAH

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6BRR \| pdb_00006brr	Download File View File

Crystal structure of DNMT3A (R836A)-DNMT3L in complex with DNA containing two CpG sites

Zhang, Z.M., Song, J.

(2018) Nature 554: 387-391

Released	2018-01-31
Method	X-RAY DIFFRACTION 2.97 Å
Organisms	Homo sapiens
Macromolecule	DNA (cytosine-5)-methyltransferase 3-like (protein) DNA (cytosine-5)-methyltransferase 3A (protein) DNA (25-MER) (nucleic acid)
Unique Ligands	SAH

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6F57 \| pdb_00006f57	Download File View File

Crystal structure of DNMT3A-DNMT3L in complex with single CpG-containing DNA

Zhang, Z.M., Song, J.

(2018) Nature 554: 387-391

Released	2018-01-31
Method	X-RAY DIFFRACTION 3.098 Å
Organisms	Homo sapiens
Macromolecule	DNA (cytosine-5)-methyltransferase 3-like (protein) DNA (cytosine-5)-methyltransferase 3A (protein) DNA (5'-D(APGPAPGPCPGPCPAPTPG)-3') (nucleic acid) DNA (5'-D(CPAPTPGPZPGPCPTPCPT)-3') (nucleic acid)
Unique Ligands	SAH

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6KW6 \| pdb_00006kw6	Download File View File

Crystal Structure of cytidine deaminase from Streptomyces noursei

Xie, T., Liu, Z.C., Wang, G.G.

To be published

Released	2020-09-09
Method	X-RAY DIFFRACTION 1.895 Å
Organisms	Streptomyces noursei
Macromolecule	cytidine deaminase (protein)
Unique Ligands	ZN

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6PZV \| pdb_00006pzv	Download File View File

Crystal Structure of Bovine DNMT1 RFTS domain in complex with H3K9me3 and Ubiquitin

Ren, W., Song, J.

(2020) Proc Natl Acad Sci U S A 117: 18439-18447

Released	2020-07-15
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	DNA (cytosine-5)-methyltransferase 1 (protein) Histone H3.3 (protein) Ubiquitin (protein)
Unique Ligands	FLC, ZN

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6U8P \| pdb_00006u8p	Download File View File

Crystal structure of DNMT3B-DNMT3L in complex with CpGpA DNA

Gao, L., Song, J.

(2020) Nat Commun 11: 3355-3355

Released	2020-06-10
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens
Macromolecule	DNA (cytosine-5)-methyltransferase 3-like (protein) DNA (cytosine-5)-methyltransferase 3B (protein) CpGpA DNA (25-MER) (nucleic acid)
Unique Ligands	MG, SAH

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6U8V \| pdb_00006u8v	Download File View File

Crystal structure of DNMT3B-DNMT3L in complex with CpGpT DNA

Gao, L., Zhang, Z.M., Song, J.

(2020) Nat Commun 11: 3355-3355

Released	2020-06-10
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	DNA (cytosine-5)-methyltransferase 3-like (protein) DNA (cytosine-5)-methyltransferase 3B (protein) CpGpT DNA (25-MER) (nucleic acid)
Unique Ligands	MG, SAH

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6U8W \| pdb_00006u8w	Download File View File

Crystal structure of DNMT3B(K777A)-DNMT3L in complex with CpGpT DNA

Gao, L., Zhang, Z.M., Song, J.

(2020) Nat Commun 11: 3355-3355

Released	2020-06-10
Method	X-RAY DIFFRACTION 2.94891558608 Å
Organisms	Homo sapiens
Macromolecule	DNA (cytosine-5)-methyltransferase 3-like (protein) DNA (cytosine-5)-methyltransferase 3B (protein) CpGpT DNA (25-MER) (nucleic acid)
Unique Ligands	MG, SAH

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6U8X \| pdb_00006u8x	Download File View File

Crystal structure of DNMT3B-DNMT3L in complex with CpApG DNA

Gao, L., Song, J.

(2020) Nat Commun 11: 3355-3355

Released	2020-06-10
Method	X-RAY DIFFRACTION 2.95063876297 Å
Organisms	Homo sapiens
Macromolecule	DNA (cytosine-5)-methyltransferase 3-like (protein) DNA (cytosine-5)-methyltransferase 3B (protein) CpApG DNA (25-MER) (nucleic acid)
Unique Ligands	MG, SAH

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6UCA \| pdb_00006uca	Download File View File

Crystal structure of human ZCCHC4 in complex with SAH

Lu, J.W., Ren, W.D., Huang, M.J., Gao, L., Li, D.X., Wang, G.G., Song, J.

(2019) Nat Commun 10: 5042-5042

Released	2019-10-16
Method	X-RAY DIFFRACTION 3.103 Å
Organisms	Homo sapiens
Macromolecule	rRNA N6-adenosine-methyltransferase ZCCHC4 (protein)
Unique Ligands	SAH, ZN

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6VIL \| pdb_00006vil	Download File View File

Crystal structure of mouse BAHCC1 BAH domain in complex with H3K27me3

Song, J., Lu, J.

(2020) Nat Genet 52: 1384-1396

Released	2020-09-16
Method	X-RAY DIFFRACTION 3.301 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	BAH and coiled-coil domain-containing protein 1 (protein) Histone H3.1 (protein)

1 to 25 of 37 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2KGG | pdb_00002kgg

2KGI | pdb_00002kgi

2KU7 | pdb_00002ku7

2M0O | pdb_00002m0o

3GL6 | pdb_00003gl6

3LPY | pdb_00003lpy

3LQH | pdb_00003lqh

3LQI | pdb_00003lqi

3LQJ | pdb_00003lqj

4Q89 | pdb_00004q89

4Q8B | pdb_00004q8b

5C6D | pdb_00005c6d

5IWX | pdb_00005iwx

5IWY | pdb_00005iwy

5YX2 | pdb_00005yx2

6BRR | pdb_00006brr

6F57 | pdb_00006f57

6KW6 | pdb_00006kw6

6PZV | pdb_00006pzv

6U8P | pdb_00006u8p

6U8V | pdb_00006u8v

6U8W | pdb_00006u8w

6U8X | pdb_00006u8x

6UCA | pdb_00006uca

6VIL | pdb_00006vil