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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Svergun, D.I."

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Search Summary

This query matches 225 Structures.

Refinements

Structure Determination Methodology

experimental (225)

Scientific Name of Source Organism

	Homo sapiens (80)
	Thermoplasma acidophilum (11)
	Kluyveromyces lactis (8)
	Sambucus nigra (8)
	Escherichia coli (6)
	Eubacterium ramulus (6)
	Mycobacterium tuberculosis H37Rv (6)
	Saccharomyces cerevisiae S288C (5)
	Candida albicans SC5314 (4)
	Mycobacterium tuberculosis (4)

More...

Taxonomy

	Eukaryota (134)
	Bacteria (57)
	Archaea (24)
	Duplodnaviria (8)
	Riboviria (7)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (207)
	ELECTRON MICROSCOPY (9)
	SOLUTION NMR (9)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (225)
	DNA (4)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (57)
	2.0 - 2.5 (54)
	2.5 - 3.0 (41)
	3.0 - 3.5 (28)
	3.5 - 4.0 (10)
	4.0 - 4.5 (5)
	> 4.5 (8)

Release Date

	2000 - 2004 (9)
	2005 - 2009 (66)
	2010 - 2014 (75)
	2015 - 2019 (32)
	2020 - 2024 (43)

Enzyme Classification Name

	Transferases (48)
	Hydrolases (46)
	Oxidoreductases (12)
	Lyases (8)
	Isomerases (6)
	Ligases (1)

Membrane Protein Annotation

	OPM (3)
	PDBTM (1)

Symmetry Type

	Asymmetric (135)
	Cyclic (71)
	Dihedral (33)

SCOP Classification

	Alpha and beta proteins (a/b) (41)
	All alpha proteins (23)
	Alpha and beta proteins (a+b) (23)
	All beta proteins (27)
	Artifacts (24)
	Low resolution protein structures (2)
	Small proteins (3)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 225 Structures

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1EG0 \| pdb_00001eg0	Download File View File

FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME

Gabashvili, I.S., Agrawal, R.K., Spahn, C.M.T., Grassucci, R.A., Svergun, D.I., Frank, J., Penczek, P.

(2000) Cell 100: 537-549

Released	2000-03-06
Method	ELECTRON MICROSCOPY 11.5 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 4

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1JQT \| pdb_00001jqt	Download File View File

Fitting of L11 protein in the low resolution cryo-EM map of E.coli 70S ribosome

Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J.

(2001) J Mol Biology 311: 777-787

Released	2001-09-07
Method	ELECTRON MICROSCOPY 18 Å
Organisms	Escherichia coli
Macromolecule	50S Ribosomal protein L11 (protein)

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1OFD \| pdb_00001ofd	Download File View File

Glutamate Synthase from Synechocystis sp in complex with 2-Oxoglutarate at 2.0 Angstrom resolution

Van Den heuvel, R.H.H., Mattevi, A.

(2003) J Mol Biology 330: 113

Released	2003-06-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 2 (protein)
Unique Ligands	AKG, F3S, FMN

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1OFE \| pdb_00001ofe	Download File View File

Glutamate Synthase from Synechocystis sp in complex with 2-Oxoglutarate and L-DON at 2.45 Angstrom resolution

Van Den heuvel, R.H.H., Mattevi, A.

(2003) J Mol Biology 330: 113

Released	2003-06-11
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 2 (protein)
Unique Ligands	AKG, F3S, FMN, ONL

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1OFF \| pdb_00001off	Download File View File

2Fe-2S Ferredoxin from Synechocystis sp. PCC 6803

Van Den heuvel, R.H.H., Mattevi, A.

(2003) J Mol Biology 330: 113

Released	2003-06-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	FERREDOXIN I (protein)
Unique Ligands	FES

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1S8N \| pdb_00001s8n	Download File View File

Crystal structure of Rv1626 from Mycobacterium tuberculosis

Morth, J.P., Feng, V., Perry, L.J., Svergun, D.I., Tucker, P.A., TB Structural Genomics Consortium (TBSGC)

(2004) Structure 12: 1595-1605

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.482 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	putative antiterminator (protein)
Unique Ligands	AZI

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1SD5 \| pdb_00001sd5	Download File View File

Crystal structure of Rv1626

Morth, J.P., Feng, V., Perry, L.J., Svergun, D.I., Tucker, P.A., TB Structural Genomics Consortium (TBSGC)

(2004) Structure 12: 1595-1605

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	putative antiterminator (protein)
Unique Ligands	IOD

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1SJQ \| pdb_00001sjq	Download File View File

NMR Structure of RRM1 from Human Polypyrimidine Tract Binding Protein Isoform 1 (PTB1)

Simpson, P.J., Monie, T.P., Szendroi, A., Davydova, N., Tyzack, J.K., Conte, M.R., Read, C.M., Cary, P.D., Svergun, D.I., Konarev, P.V., Petoukhov, M.V., Curry, S., Matthews, S.J.

(2004) Structure 12: 1631-1643

Released	2004-09-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Polypyrimidine tract-binding protein 1 (protein)

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1SJR \| pdb_00001sjr	Download File View File

NMR Structure of RRM2 from Human Polypyrimidine Tract Binding Protein Isoform 1 (PTB1)

Simpson, P.J., Monie, T.P., Szendroi, A., Davydova, N., Tyzack, J.K., Conte, M.R., Read, C.M., Cary, P.D., Svergun, D.I., Konarev, P.V., Petoukhov, M.V., Curry, S., Matthews, S.J.

(2004) Structure 12: 1631-1643

Released	2004-09-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Polypyrimidine tract-binding protein 1 (protein)

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1WT6 \| pdb_00001wt6	Download File View File

Coiled-Coil domain of DMPK

Garcia, P., Marino, M., Mayans, O.

(2006) FASEB J 20: 1142-1151

Released	2005-11-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Myotonin-protein kinase (protein)

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1XQV \| pdb_00001xqv	Download File View File

Crystal structure of inactive F1-mutant G37A

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)

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1XQW \| pdb_00001xqw	Download File View File

Crystal structure of F1-mutant S105A complex with PHE-LEU

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	LEU, PHE

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1XQX \| pdb_00001xqx	Download File View File

Crystal structure of F1-mutant S105A complex with PCK

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	PCS

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1XQY \| pdb_00001xqy	Download File View File

Crystal structure of F1-mutant S105A complex with PRO-LEU-GLY-GLY

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Thermoplasma acidophilum
Macromolecule	PLGG (protein) Proline iminopeptidase (protein)
Unique Ligands	PRO

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1XRL \| pdb_00001xrl	Download File View File

Crystal structure of active site F1-mutant Y205F complex with inhibitor PCK

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	PHK

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1XRM \| pdb_00001xrm	Download File View File

Crystal structure of active site F1-mutant E213Q soaked with peptide Ala-Phe

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	ALA, PHE

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1XRN \| pdb_00001xrn	Download File View File

Crystal structure of active site F1-mutant E213Q soaked with peptide Phe-Ala

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	ALA

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1XRO \| pdb_00001xro	Download File View File

Crystal structure of active site F1-mutant E213Q soaked with peptide Phe-Leu

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	LEU

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1XRP \| pdb_00001xrp	Download File View File

Crystal structure of active site F1-mutant E213Q soaked with peptide Pro-Leu-Gly-Gly

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermoplasma acidophilum
Macromolecule	PLGG (protein) Proline iminopeptidase (protein)
Unique Ligands	PRO

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1XRQ \| pdb_00001xrq	Download File View File

Crystal structure of active site F1-mutant E245Q soaked with peptide Phe-Leu

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	LEU

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1XRR \| pdb_00001xrr	Download File View File

Crystal structure of active site F1-mutant E245Q soaked with peptide Pro-Pro

Goettig, P., Brandstetter, H., Groll, M., Goehring, W., Konarev, P.V., Svergun, D.I., Huber, R., Kim, J.-S.

(2005) J Biological Chem 280: 33387-33396

Released	2005-07-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	PRO

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1YRP \| pdb_00001yrp	Download File View File

Catalytic domain of human ZIP kinase phosphorylated at Thr265

Kursula, P., Vahokoski, J., Wilmanns, M.

(2016) Structure

Released	2006-06-20
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Death-associated protein kinase 3 (protein)
Unique Ligands	DTT

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1YS7 \| pdb_00001ys7	Download File View File

Crystal structure of the response regulator protein prrA complexed with Mg2+

Nowak, E., Panjikar, S., Tucker, P., Mycobacterium Tuberculosis Structural Proteomics Project (XMTB)

(2006) J Biological Chem 281: 9659-9666

Released	2006-02-07
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Transcriptional regulatory protein prrA (protein)
Unique Ligands	ACT, GOL, MG, TRS

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1ZAN \| pdb_00001zan	Download File View File

Crystal structure of anti-NGF AD11 Fab

Covaceuszach, S., Cattaneo, A., Cassetta, A., Lamba, D.

(2008) J Mol Biology 381: 881-896

Released	2006-04-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Rattus norvegicus
Macromolecule	Fab AD11 Heavy Chain (protein) Fab AD11 Light Chain (protein)
Unique Ligands	CL

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1ZXY \| pdb_00001zxy	Download File View File

Anthranilate Phosphoribosyltransferase from Sulfolobus solfataricus in complex with PRPP and Magnesium

Marino, M., Deuss, M., Sterner, R., Mayans, O.

(2006) J Biological Chem 281: 21410-21421

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Saccharolobus solfataricus
Macromolecule	Anthranilate phosphoribosyltransferase (protein)
Unique Ligands	MG, PRP

1 to 25 of 225 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1EG0 | pdb_00001eg0

1JQT | pdb_00001jqt

1OFD | pdb_00001ofd

1OFE | pdb_00001ofe

1OFF | pdb_00001off

1S8N | pdb_00001s8n

1SD5 | pdb_00001sd5

1SJQ | pdb_00001sjq

1SJR | pdb_00001sjr

1WT6 | pdb_00001wt6

1XQV | pdb_00001xqv

1XQW | pdb_00001xqw

1XQX | pdb_00001xqx

1XQY | pdb_00001xqy

1XRL | pdb_00001xrl

1XRM | pdb_00001xrm

1XRN | pdb_00001xrn

1XRO | pdb_00001xro

1XRP | pdb_00001xrp

1XRQ | pdb_00001xrq

1XRR | pdb_00001xrr

1YRP | pdb_00001yrp

1YS7 | pdb_00001ys7

1ZAN | pdb_00001zan

1ZXY | pdb_00001zxy