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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Simon, B."

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Search Summary

This query matches 84 Structures.

Refinements

Structure Determination Methodology

experimental (84)

Scientific Name of Source Organism

	Homo sapiens (48)
	Drosophila melanogaster (13)
	Thermochaetoides thermophila (5)
	Caenorhabditis elegans (4)
	synthetic construct (4)
	Schizosaccharomyces pombe 972h- (3)
	Thermochaetoides thermophila DSM 1495 (3)
	Amanita phalloides (1)
	Flock House virus (1)
	Gallus gallus (1)

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Taxonomy

	Eukaryota (76)
	other sequences (4)
	Archaea (3)
	Bacteria (2)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (49)
	SOLUTION NMR (33)
	ELECTRON MICROSCOPY (1)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (79)
	RNA (13)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (14)
	2.0 - 2.5 (16)
	2.5 - 3.0 (10)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	2000 - 2004 (6)
	2005 - 2009 (14)
	2010 - 2014 (13)
	2015 - 2019 (27)
	2020 - 2024 (23)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (26)
	Hydrolases (3)
	Oxidoreductases (1)
	Isomerases (1)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)
	mpstruc (1)

Symmetry Type

	Asymmetric (68)
	Cyclic (11)

SCOP Classification

	All beta proteins (13)
	Artifacts (10)
	Alpha and beta proteins (a+b) (14)
	All alpha proteins (4)
	Membrane and cell surface proteins and peptides (2)
	Small proteins (1)

AllSelected

1 to 25 of 84 Structures

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1R2N \| pdb_00001r2n	Download File View File

NMR structure of the all-trans retinal in dark-adapted Bacteriorhodopsin

Patzelt, H., Simon, B., terLaak, A., Kessler, B., Kuhne, R., Schmieder, P., Oesterhaelt, D., Oschkinat, H.

(2002) Proc Natl Acad Sci U S A 99: 9765-9770

Released	2003-10-28
Method	SOLUTION NMR
Organisms	Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	RET

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1R84 \| pdb_00001r84	Download File View File

NMR structure of the 13-cis-15-syn retinal in dark_adapted bacteriorhodopsin

Patzelt, H., Simon, B., Ter Laak, A., Kessler, B., Kuhne, R., Schmieder, P., Oesterhaelt, D., Oschkinat, H.

(2002) Proc Natl Acad Sci U S A 99: 9765-9770

Released	2003-11-11
Method	SOLUTION NMR
Organisms	Halobacterium salinarum
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	RET

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1T2R \| pdb_00001t2r	Download File View File

Structural basis for 3' end recognition of nucleic acids by the Drosophila Argonaute 2 PAZ domain

Lingel, A., Simon, B., Izaurralde, E., Sattler, M.

(2004) Nat Struct Mol Biol 11: 576-577

Released	2004-06-01
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	Argonaute 2 (protein) 5'-R(CPUPCPAP*C)-3' (nucleic acid)

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1T2S \| pdb_00001t2s	Download File View File

Structural basis for 3' end recognition of nucleic acids by the Drosophila Argonaute 2 PAZ domain

Lingel, A., Simon, B., Izaurralde, E., Sattler, M.

(2004) Nat Struct Mol Biol 11: 576-577

Released	2004-06-01
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	Argonaute 2 (protein) 5'-D(CPTPCPAP*C)-3' (nucleic acid)

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1VYN \| pdb_00001vyn	Download File View File

STRUCTURE AND NUCLEIC ACID BINDING OF THE DROSOPHILA ARGONAUTE2 PAZ DOMAIN

Lingel, A., Simon, B., Izaurralde, E., Sattler, M.

(2003) Nature 426: 465-469

Released	2004-05-11
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	ARGONAUTE2 (protein)

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1W4M \| pdb_00001w4m	Download File View File

Structure of the human pleckstrin DEP domain by multidimensional NMR

Civera, C., Simon, B., Stier, G., Sattler, M., Macias, M.J.

(2005) Proteins 58: 354

Released	2004-12-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PLECKSTRIN (protein)

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1XWH \| pdb_00001xwh	Download File View File

NMR structure of the first phd finger of autoimmune regulator protein (AIRE1): insights into apeced

Bottomley, M.J., Stier, G., Krasotkina, J., Legube, G., Simon, B., Akhtar, A., Sattler, M., Musco, G.

(2005) J Biological Chem 280: 11505-11512

Released	2005-01-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Autoimmune regulator (protein)
Unique Ligands	ZN

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1XX0 \| pdb_00001xx0	Download File View File

Structure of the C-terminal PH domain of human pleckstrin

Edlich, C., Stier, G., Simon, B., Sattler, M., Muhle-Goll, C.

(2005) Structure 13: 277-286

Released	2005-05-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Pleckstrin (protein)

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1YRP \| pdb_00001yrp	Download File View File

Catalytic domain of human ZIP kinase phosphorylated at Thr265

Kursula, P., Vahokoski, J., Wilmanns, M.

(2016) Structure

Released	2006-06-20
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Death-associated protein kinase 3 (protein)
Unique Ligands	DTT

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2A2A \| pdb_00002a2a	Download File View File

High-resolution crystallographic analysis of the autoinhibited conformation of a human death-associated protein kinase

Kursula, P., Wilmanns, M.

(2016) Structure

Released	2006-10-17
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	Death-associated protein kinase 2 (protein)
Unique Ligands	CL, DTT, GOL, NA

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2A38 \| pdb_00002a38	Download File View File

Crystal structure of the N-Terminus of titin

Marino, M., Muhle-Goll, C., Svergun, D., Demirel, M., Mayans, O.

(2006) Structure 14: 1437-1447

Released	2006-06-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Titin (protein)
Unique Ligands	CD

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2B9Z \| pdb_00002b9z	Download File View File

Solution structure of FHV B2, a viral suppressor of RNAi

Lingel, A., Simon, B., Izaurralde, E., Sattler, M.

(2005) EMBO Rep 6: 1149-1155

Released	2005-11-29
Method	SOLUTION NMR
Organisms	Flock House virus
Macromolecule	B2 protein (protein)

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2C5Z \| pdb_00002c5z	Download File View File

Structure and CTD binding of the Set2 SRI domain

Vojnic, E., Simon, B., Strahl, B.D., Sattler, M., Cramer, P.

(2006) J Biological Chem 281: 13-15

Released	2005-11-14
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	SET DOMAIN PROTEIN 2 (protein)

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2JXC \| pdb_00002jxc	Download File View File

Structure of the EPS15-EH2 Stonin2 Complex

Rumpf, J., Simon, B., Jung, N., Maritzen, T., Haucke, V., Sattler, M., Groemping, Y.

(2008) EMBO J 27: 558-569

Released	2008-01-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor substrate 15 (protein) Stonin-2 (protein)
Unique Ligands	CA

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2M58 \| pdb_00002m58	Download File View File

Structure of 2'-5' AG1 lariat forming ribozyme in its inactive state

Carlomagno, T., Amata, I., Codutti, L., Falb, M., Fohrer, J., Simon, B.

(2013) J Am Chem Soc 135: 4403-4411

Released	2013-04-03
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA (59-MER) (nucleic acid)

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2MF9 \| pdb_00002mf9	Download File View File

Solution structure of the N-terminal domain of human FKBP38 (FKBP38NTD)

Kang, C., Ye, H., Simon, B., Sattler, M., Yoon, H.S.

(2013) Sci Rep 3: 2985-2985

Released	2013-11-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP8 (protein)

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2N0R \| pdb_00002n0r	Download File View File

RNA structure determination by solid-state NMR spectroscopy

Marchanka, A., Simon, B., Althoff-Ospelt, G., Carlomagno, T.

(2015) Nat Commun 6: 7024-7024

Released	2015-05-20
Method	SOLID-STATE NMR
Organisms	synthetic construct
Macromolecule	RNA (5'-R(GPCPUPGPAPGPCPUPCPGPAPAPAPGPAPGPCPAPAPUPGPAPUPGPUPC)-3') (nucleic acid)

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2W4K \| pdb_00002w4k	Download File View File

X-ray structure of a DAP-Kinase 2-302

De Diego, I., Kuper, J., Lehmann, F., Wilmanns, M.

(2014) Chem Biol 21: 264

Released	2009-12-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	DEATH-ASSOCIATED PROTEIN KINASE 1 (protein)
Unique Ligands	ADP, MG

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2W84 \| pdb_00002w84	Download File View File

Structure of Pex14 in complex with Pex5

Neufeld, C., Filipp, F.V., Simon, B., Neuhaus, A., Schueller, N., David, C., Kooshapur, H., Madl, T., Erdmann, R., Schliebs, W., Wilmanns, M., Sattler, M.

(2009) EMBO J 28: 745-754

Released	2009-02-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PEROXISOMAL MEMBRANE PROTEIN PEX14 (protein) PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR (protein)

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2W85 \| pdb_00002w85	Download File View File

Structure of Pex14 in complex with Pex19

Neufeld, C., Filipp, F.V., Simon, B., Neuhaus, A., Schueller, N., David, C., Kooshapur, H., Madl, T., Erdmann, R., Schliebs, W., Wilmanns, M., Sattler, M.

(2009) EMBO J 28: 745

Released	2009-02-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PEROXIN-19 (protein) PEROXISOMAL MEMBRANE ANCHOR PROTEIN PEX14 (protein)

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2XEB \| pdb_00002xeb	Download File View File

NMR STRUCTURE OF THE PROTEIN-UNBOUND SPLICEOSOMAL U4 SNRNA 5' STEM LOOP

Falb, M., Amata, I., Gabel, F., Simon, B., Carlomagno, T.

(2010) Nucleic Acids Res 38: 6274-6285

Released	2010-05-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	5'-R(PGPAPUPCPGPUPAPGPCPCPAPAPUPGPAP GPGPUPU)-3' (nucleic acid) 5'-R(PGPCPCPGPAPGPGPCPGPCPGPAPUP*C)-3' (nucleic acid)

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2XFM \| pdb_00002xfm	Download File View File

Complex structure of the MIWI Paz domain bound to methylated single stranded RNA

Simon, B., Kirkpatrick, J.P., Eckhardt, S., Sehr, P., Andrade-Navarro, M.A., Pillai, R.S., Carlomagno, T.

(2011) Structure 19: 172

Released	2011-01-26
Method	SOLUTION NMR
Organisms	Mus musculus synthetic construct
Macromolecule	PIWI-LIKE PROTEIN 1 (protein) 5'-R(APCPCPGPAPCPUP(OMU)P)-3' (nucleic acid)

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2XNF \| pdb_00002xnf	Download File View File

The Mediator Med25 activator interaction domain: Structure and cooperative binding of VP16 subdomains

Vojnic, E., Mourao, A., Seizl, M., Simon, B., Wenzeck, L., Lariviere, L., Baumli, S., Meisterernst, M., Sattler, M., Cramer, P.

(2011) Nat Struct Mol Biol 18: 404

Released	2011-03-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25 (protein)

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2XUU \| pdb_00002xuu	Download File View File

Crystal structure of a DAP-kinase 1 mutant

de Diego, I., Kuper, J., Lehmann, F., Wilmanns, M.

(2014) Chem Biol 21: 264

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	DEATH-ASSOCIATED PROTEIN KINASE 1 (protein)
Unique Ligands	ADP, MG, SO4