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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Shen, X."

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Search Summary

This query matches 90 Structures.

Refinements

Structure Determination Methodology

experimental (90)

Scientific Name of Source Organism

	Homo sapiens (38)
	Aedes aegypti (9)
	Kurthia massiliensis (6)
	Anopheles gambiae (4)
	Human immunodeficiency virus 1 (4)
	Mus musculus (4)
	Pseudomonas aeruginosa (4)
	Mycobacteroides abscessus (3)
	Anas platyrhynchos (2)
	Candida albicans WO-1 (2)

More...

Taxonomy

	Eukaryota (65)
	Bacteria (18)
	Riboviria (9)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (65)
	ELECTRON MICROSCOPY (15)
	SOLUTION NMR (10)

Polymer Entity Type

	Protein (90)
	DNA (8)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (27)
	2.0 - 2.5 (17)
	2.5 - 3.0 (18)
	3.0 - 3.5 (10)
	3.5 - 4.0 (3)
	4.0 - 4.5 (2)
	> 4.5 (1)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (14)
	2010 - 2014 (14)
	2015 - 2019 (19)
	2020 - 2024 (33)
	2025 - 2029 (6)

Enzyme Classification Name

	Hydrolases (23)
	Transferases (11)
	Isomerases (4)
	Oxidoreductases (2)
	Lyases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (55)
	Cyclic (27)
	Dihedral (8)

SCOP Classification

	Alpha and beta proteins (a/b) (11)
	Alpha and beta proteins (a+b) (7)
	Artifacts (11)
	All alpha proteins (9)
	Membrane and cell surface proteins and peptides (9)
	All beta proteins (4)
	Small proteins (2)

AllSelected

1 to 25 of 90 Structures

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1PGV \| pdb_00001pgv	Download File View File

Structural Genomics of Caenorhabditis elegans: tropomodulin C-terminal domain

Symersky, J., Lu, S., Li, S., Chen, L., Meehan, E., Luo, M., Qiu, S., Bunzel, R.J., Luo, D., Arabashi, A., Nagy, L.A., Lin, G., Luan, W.C.-H., Carson, M., Gray, R., Huang, W., Southeast Collaboratory for Structural Genomics (SECSG)

(2004) Proteins 56: 384-386

Released	2003-06-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Caenorhabditis elegans
Macromolecule	tropomodulin TMD-1 (protein)

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1R94 \| pdb_00001r94	Download File View File

Crystal Structure of IscA (MERCURY DERIVATIVE)

Bilder, P.W., Ding, H., Newcomer, M.E.

(2004) Biochemistry 43: 133-139

Released	2003-12-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Protein yfhF (protein)
Unique Ligands	HG

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1R95 \| pdb_00001r95	Download File View File

Crystal Structure of IscA (native)

Bilder, P.W., Ding, H., Newcomer, M.E.

(2004) Biochemistry 43: 133-139

Released	2003-12-23
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Escherichia coli
Macromolecule	Protein yfhF (protein)

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1TFQ \| pdb_00001tfq	Download File View File

NMR Structure of an Antagonists of the XIAP-Caspase-9 Interaction Complexed to the BIR3 domain of XIAP

Oost, T.K., Sun, C., Armstrong, R.C., Al-Assaad, A.S., Betz, S.F., Deckwerth, T.L., Elmore, S.W., Meadows, R.P., Olejniczak, E.T., Oleksijew, A., Oltersdorf, T., Rosenberg, S.H., Shoemaker, A.R., Zou, H., Fesik, S.W.

(2004) J Med Chem 47: 4417-4426

Released	2004-09-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 4 (protein)
Unique Ligands	998, ZN

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1TFT \| pdb_00001tft	Download File View File

NMR Structure of an Antagonists of the XIAP-Caspase-9 Interaction Complexed to the BIR3 domain of XIAP

Oost, T.K., Sun, C., Armstrong, R.C., Al-Assaad, A.S., Betz, S.F., Deckwerth, T.L., Elmore, S.W., Meadows, R.P., Olejniczak, E.T., Oleksijew, A.K., Oltersdorf, T., Rosenberg, S.H., Shoemaker, A.R., Zou, H., Fesik, S.W.

(2004) J Med Chem 47: 4417-4426

Released	2005-05-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 4 (protein)
Unique Ligands	997, ZN

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1TMW \| pdb_00001tmw	Download File View File

Solution structure of Human Coactosin Like Protein D123N

Dai, H., Wu, J., Xu, Y., Tang, Y., Ding, H., Shi, Y.

To be published

Released	2005-06-28
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Coactosin-like protein (protein)

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1U4A \| pdb_00001u4a	Download File View File

Solution structure of human SUMO-3 C47S

Ding, H., Xu, Y., Dai, H., Tang, Y., Wu, J., Shi, Y.

(2005) Biochemistry 44: 2790-2799

Released	2005-03-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin-like protein SMT3A (protein)

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1YIY \| pdb_00001yiy	Download File View File

Aedes aegypti kynurenine aminotransferase

Han, Q., Gao, Y.G., Robinson, H., Ding, H., Wilson, S., Li, J.

(2005) FEBS J 272: 2198-2206

Released	2005-05-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aedes aegypti
Macromolecule	kynurenine aminotransferase; glutamine transaminase K (protein)
Unique Ligands	BR, PMP

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1YIZ \| pdb_00001yiz	Download File View File

Aedes aegypti kynurenine aminotrasferase

Han, Q., Gao, Y.G., Robinson, H., Ding, H., Wilson, S., Li, J.

(2005) FEBS J 272: 2198-2206

Released	2005-05-10
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Aedes aegypti
Macromolecule	kynurenine aminotransferase; glutamine transaminase (protein)
Unique Ligands	BR

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2FQM \| pdb_00002fqm	Download File View File

Crystal structure of the oligomerization domain of the phosphoprotein of vesicular stomatitis virus

Ding, H., Green, T.J., Lu, S., Luo, M.

(2006) J Virol 80: 2808-2814

Released	2006-02-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Vesicular stomatitis Indiana virus
Macromolecule	Phosphoprotein (protein)

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2O1Y \| pdb_00002o1y	Download File View File

Solution structure of the anti-apoptotic protein Bcl-xL in complex with an acyl-sulfonamide-based ligand

Bruncko, M., Oost, T.K., Belli, B.A., Ding, H., Joseph, M.K., Kunzer, A., Martineau, D., McClellan, W.J., Mitten, M., Ng, S.C., Nimmer, P.M., Oltersdorf, T., Park, C.M., Petros, A.M., Shoemaker, A.R., Song, X., Wang, X., Wendt, M.D., Zhang, H., Fesik, S.W., Rosenberg, S.H., Elmore, S.W.

(2007) J Med Chem 50: 641-662

Released	2007-02-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-X (protein)
Unique Ligands	43B

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2O21 \| pdb_00002o21	Download File View File

Solution structure of the anti-apoptotic protein Bcl-2 in complex with an acyl-sulfonamide-based ligand

(2007) J Med Chem 50: 641-662

Released	2007-02-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-2 (protein)
Unique Ligands	43B

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2O22 \| pdb_00002o22	Download File View File

Solution structure of the anti-apoptotic protein Bcl-2 in complex with an acyl-sulfonamide-based ligand

(2007) J Med Chem 50: 641-662

Released	2007-02-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-2 (protein)
Unique Ligands	LIU

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2O2F \| pdb_00002o2f	Download File View File

Solution structure of the anti-apoptotic protein Bcl-2 in complex with an acyl-sulfonamide-based ligand

(2007) J Med Chem 50: 641-662

Released	2007-02-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-2 (protein)
Unique Ligands	LI0

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2O2M \| pdb_00002o2m	Download File View File

Solution structure of the anti-apoptotic protein Bcl-xL in complex with an acyl-sulfonamide-based ligand

(2007) J Med Chem 50: 641-662

Released	2007-02-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-X (protein)
Unique Ligands	LI0

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2O2N \| pdb_00002o2n	Download File View File

Solution structure of the anti-apoptotic protein Bcl-xL in complex with an acyl-sulfonamide-based ligand

(2007) J Med Chem 50: 641-662

Released	2007-02-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-X (protein)
Unique Ligands	LIW

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3EII \| pdb_00003eii	Download File View File

Zinc-bound glycoside hydrolase 61 E from Thielavia terrestris

Salbo, R., Welner, D., Lo Leggio, L., Harris, P., McFarland, K.

(2010) Biochemistry 49: 3305-3316

Released	2009-10-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Thermothielavioides terrestris
Macromolecule	protein GH61E (protein)
Unique Ligands	GOL, NAG, SO4, ZN

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3EJA \| pdb_00003eja	Download File View File

Magnesium-bound glycoside hydrolase 61 isoform E from Thielavia terrestris

Salbo, R., Welner, D., Lo Leggio, L., Harris, P., McFarland, K.

(2010) Biochemistry 49: 3305-3316

Released	2009-10-27
Method	X-RAY DIFFRACTION 1.902 Å
Organisms	Thermothielavioides terrestris
Macromolecule	protein GH61E (protein)
Unique Ligands	GOL, MG, NAG, SO4

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3K40 \| pdb_00003k40	Download File View File

Crystal structure of Drosophila 3,4-dihydroxyphenylalanine decarboxylase

Han, Q., Ding, H., Robinson, H., Christensen, B.M., Li, J.

(2010) PLoS One 5: e8826-e8826

Released	2010-02-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Drosophila melanogaster
Macromolecule	Aromatic-L-amino-acid decarboxylase (protein)
Unique Ligands	GOL

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3NSP \| pdb_00003nsp	Download File View File

Crystal structure of tetrameric RXRalpha-LBD

Zhang, H., Hu, T., Li, L., Zhou, R., Chen, L., Hu, L., Jiang, H., Shen, X.

(2011) J Biological Chem 286: 1868-1875

Released	2010-11-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Retinoid X receptor, alpha (protein)

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3NSQ \| pdb_00003nsq	Download File View File

Crystal structure of tetrameric RXRalpha-LBD complexed with antagonist danthron

Zhang, H., Hu, T., Li, L., Zhou, R., Chen, L., Hu, L., Jiang, H., Shen, X.

(2011) J Biological Chem 286: 1868-1875

Released	2010-11-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Retinoid X receptor, alpha (protein)
Unique Ligands	CHZ

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3OW6 \| pdb_00003ow6	Download File View File

Crystal Structure of HSP90 with N-Aryl-benzimidazolone I

Park, C.H.

(2010) Bioorg Med Chem Lett 20: 7503-7506

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	MEX

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3OWB \| pdb_00003owb	Download File View File

Crystal Structure of HSP90 with VER-49009

Park, C.H.

(2010) Bioorg Med Chem Lett 20: 7503-7506

Released	2011-09-21
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	BSM

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3OWD \| pdb_00003owd	Download File View File

Crystal Structure of HSP90 with N-Aryl-benzimidazolone II

Park, C.H.

(2010) Bioorg Med Chem Lett 20: 7503-7506

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	MEY

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4FD4 \| pdb_00004fd4	Download File View File

Crystal structure of mosquito arylalkylamine N-Acetyltransferase like 5b

Han, Q., Robinson, R., Li, J.

(2012) Proc Natl Acad Sci U S A 109: 11669-11674

Released	2012-06-27
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Aedes aegypti
Macromolecule	arylalkylamine N-Acetyltransferase like 5b (protein)
Unique Ligands	GOL

1 to 25 of 90 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1PGV | pdb_00001pgv

1R94 | pdb_00001r94

1R95 | pdb_00001r95

1TFQ | pdb_00001tfq

1TFT | pdb_00001tft

1TMW | pdb_00001tmw

1U4A | pdb_00001u4a

1YIY | pdb_00001yiy

1YIZ | pdb_00001yiz

2FQM | pdb_00002fqm

2O1Y | pdb_00002o1y

2O21 | pdb_00002o21

2O22 | pdb_00002o22

2O2F | pdb_00002o2f

2O2M | pdb_00002o2m

2O2N | pdb_00002o2n

3EII | pdb_00003eii

3EJA | pdb_00003eja

3K40 | pdb_00003k40

3NSP | pdb_00003nsp

3NSQ | pdb_00003nsq

3OW6 | pdb_00003ow6

3OWB | pdb_00003owb

3OWD | pdb_00003owd

4FD4 | pdb_00004fd4