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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Santos, M.A."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Homo sapiens (10)
	Candida albicans (4)
	Leptospira interrogans (2)
	Bacillus phage SPP1 (1)

Taxonomy

	Eukaryota (14)
	Bacteria (2)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (14)
	SOLUTION NMR (3)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (2)
	2.0 - 2.5 (4)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (5)
	2015 - 2019 (6)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (6)
	Ligases (4)
	Oxidoreductases (2)
	Transferases (1)

Symmetry Type

	Asymmetric (12)
	Cyclic (5)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	All beta proteins (2)
	Alpha and beta proteins (a/b) (2)
	Artifacts (3)
	All alpha proteins (2)

AllSelected

1 to 17 of 17 Structures

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2JES \| pdb_00002jes	Download File View File

Portal protein (gp6) from bacteriophage SPP1

Lebedev, A.A., Krause, M.H., Isidro, A.L., Vagin, A.A., Orlova, E.V., Turner, J., Dodson, E.J., Tavares, P., Antson, A.A.

(2007) EMBO J 26: 1984

Released	2007-03-27
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Bacillus phage SPP1
Macromolecule	PORTAL PROTEIN (protein) UNIDENTIFIED FRAGMENT OF PORTAL PROTEIN (protein)
Unique Ligands	CA, HG

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2RC5 \| pdb_00002rc5	Download File View File

Refined structure of FNR from Leptospira interrogans

Nascimento, A.S., Catalano-Dupuy, D.L., Polikarpov, I., Ceccarelli, E.A.

(2007) BMC Struct Biol 7: 69-69

Released	2008-03-25
Method	X-RAY DIFFRACTION 2.431 Å
Organisms	Leptospira interrogans
Macromolecule	Ferredoxin-NADP reductase (protein)
Unique Ligands	FAD, SO4, ZN

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2RC6 \| pdb_00002rc6	Download File View File

Refined structure of FNR from Leptospira interrogans bound to NADP+

Nascimento, A.S., Catalano-Dupuy, D.L., Ceccarelli, E.A., Polikarpov, I.

(2007) BMC Struct Biol 7: 69-69

Released	2008-03-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Leptospira interrogans
Macromolecule	Ferredoxin-NADP reductase (protein)
Unique Ligands	FAD, NAP, SO4, ZN

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3HZF \| pdb_00003hzf	Download File View File

Structure of TR-alfa bound to selective thyromimetic GC-1 in C2 space group

Aparicio, R., Bleicher, L., Polikarpov, I.

(2008) BMC Struct Biol 8: 8-8

Released	2009-07-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Thyroid hormone receptor, alpha isoform 1 variant (protein)
Unique Ligands	B72

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3ILZ \| pdb_00003ilz	Download File View File

Structure of TR-alfa bound to selective thyromimetic GC-1 in P212121 space group

Aparicio, R., Polikarpov, L., Bleicher, L.

(2008) BMC Struct Biol 8: 8-8

Released	2010-04-28
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Thyroid hormone receptor, alpha isoform 1 variant (protein)
Unique Ligands	B72

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3QNE \| pdb_00003qne	Download File View File

Candida albicans seryl-tRNA synthetase

Rocha, R., Santos, M.A., Pereira, P.J.B., Macedo-Ribeiro, S.

(2011) Proc Natl Acad Sci U S A 108: 14091-14096

Released	2011-08-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Candida albicans
Macromolecule	Seryl-tRNA synthetase, cytoplasmic (protein)

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3QO5 \| pdb_00003qo5	Download File View File

Crystal Structure of the seryl-tRNA synthetase from Candida albicans

Rocha, R., Santos, M.A., Pereira, P.J.B., Macedo-Ribeiro, S.

(2011) Proc Natl Acad Sci U S A 108: 14091-14096

Released	2011-08-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Candida albicans
Macromolecule	Seryl-tRNA synthetase, cytoplasmic (protein)

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3QO7 \| pdb_00003qo7	Download File View File

Crystal structure of the seryl-tRNA synthetase from Candida albicans

Rocha, R., Santos, M.A., Pereira, P.J.B., Macedo-Ribeiro, S.

(2011) Proc Natl Acad Sci U S A 108: 14091-14096

Released	2011-08-03
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Candida albicans
Macromolecule	Seryl-tRNA synthetase, cytoplasmic (protein)
Unique Ligands	ATP

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3QO8 \| pdb_00003qo8	Download File View File

Crystal Structure of seryl-tRNA synthetase from Candida albicans

Rocha, R., Santos, M.A., Pereira, P.J.B., Macedo-Ribeiro, S.

(2011) Proc Natl Acad Sci U S A 108: 14091-14096

Released	2011-08-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Candida albicans
Macromolecule	Seryl-tRNA synthetase, cytoplasmic (protein)
Unique Ligands	MG, SSA

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6EKN \| pdb_00006ekn	Download File View File

Crystal structure of MMP12 in complex with inhibitor BE7.

Ciccone, L., Tepshi, L., Nuti, E., Rossello, A., Stura, E.A.

(2018) J Med Chem 61: 4421-4435

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Macrophage metalloelastase (protein)
Unique Ligands	B9N, CA, EDO, ZN

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6ELA \| pdb_00006ela	Download File View File

Crystal structure of MMP12 in complex with inhibitor BE4.

Ciccone, L., Tepshi, L., Nuti, E., Rossello, A., Stura, E.A.

(2018) J Med Chem 61: 4421-4435

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.485 Å
Organisms	Homo sapiens
Macromolecule	Macrophage metalloelastase (protein)
Unique Ligands	B9Z, CA, DIO, EDO, ZN

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6ENM \| pdb_00006enm	Download File View File

Crystal structure of MMP12 in complex with hydroxamate inhibitor LP168.

Vera, L., Nuti, E., Rossello, A., Stura, E.A.

(2018) J Med Chem 61: 4421-4435

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Homo sapiens
Macromolecule	Macrophage metalloelastase (protein)
Unique Ligands	CA, LPW, ZN

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6EOX \| pdb_00006eox	Download File View File

Crystal structure of MMP12 in complex with carboxylic inhibitor LP165.

Vera, L., Nuti, E., Rossello, A., Stura, E.A.

(2018) J Med Chem 61: 4421-4435

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Macrophage metalloelastase (protein)
Unique Ligands	BKW, CA, ZN

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6ESM \| pdb_00006esm	Download File View File

Crystal structure of MMP9 in complex with inhibitor BE4.

Ciccone, L., Tepshi, L., Nuti, E., Rossello, A., Stura, E.A.

(2018) J Med Chem 61: 4421-4435

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.104 Å
Organisms	Homo sapiens
Macromolecule	Matrix metalloproteinase-9,Matrix metalloproteinase-9 (protein)
Unique Ligands	B9Z, CA, PZE, ZN

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6MBM \| pdb_00006mbm	Download File View File

HS02 - Intragenic antimicrobial peptides derived from the protein unconventional myosin 1h

Santos, M.A., Brand, G.D., Oliveira, A.L.

(2019) PLoS One 14: e0220656-e0220656

Released	2019-08-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Unconventional myosin-Ih peptide (protein)

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6VLA \| pdb_00006vla	Download File View File

Hs05 - Intragenic antimicrobial peptide

Santos, M.A., Silva, E.M.C., Brand, G.D., Oliveira, A.L.

(2020) Mater Sci Eng C Mater Biol Appl 119: 111581

Released	2020-12-02
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Intragenic antimicrobial peptide (protein)

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8EB1 \| pdb_00008eb1	Download File View File

Chim2 - Intragenic antimicrobial peptide

de Freitas, T.V., Oliveira, A.L., Santos, M.A., Brand, G.D.

(2023) J Biological Chem 299: 103056-103056

Released	2023-03-01
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Unconventional myosin-Ih, Transcription activator BRG1 intragenic antimicrobial chimeric peptide (protein)

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2JES | pdb_00002jes

Portal protein (gp6) from bacteriophage SPP1

2RC5 | pdb_00002rc5

Refined structure of FNR from Leptospira interrogans

2RC6 | pdb_00002rc6

Refined structure of FNR from Leptospira interrogans bound to NADP+

3HZF | pdb_00003hzf

Structure of TR-alfa bound to selective thyromimetic GC-1 in C2 space group

3ILZ | pdb_00003ilz

Structure of TR-alfa bound to selective thyromimetic GC-1 in P212121 space group

3QNE | pdb_00003qne

Candida albicans seryl-tRNA synthetase

3QO5 | pdb_00003qo5

Crystal Structure of the seryl-tRNA synthetase from Candida albicans

3QO7 | pdb_00003qo7

Crystal structure of the seryl-tRNA synthetase from Candida albicans

3QO8 | pdb_00003qo8

Crystal Structure of seryl-tRNA synthetase from Candida albicans

6EKN | pdb_00006ekn

Crystal structure of MMP12 in complex with inhibitor BE7.

6ELA | pdb_00006ela

Crystal structure of MMP12 in complex with inhibitor BE4.

6ENM | pdb_00006enm

Crystal structure of MMP12 in complex with hydroxamate inhibitor LP168.

6EOX | pdb_00006eox

Crystal structure of MMP12 in complex with carboxylic inhibitor LP165.

6ESM | pdb_00006esm

Crystal structure of MMP9 in complex with inhibitor BE4.

6MBM | pdb_00006mbm

HS02 - Intragenic antimicrobial peptides derived from the protein unconventional myosin 1h

6VLA | pdb_00006vla

Hs05 - Intragenic antimicrobial peptide

8EB1 | pdb_00008eb1

Chim2 - Intragenic antimicrobial peptide

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2JES | pdb_00002jes

2RC5 | pdb_00002rc5

2RC6 | pdb_00002rc6

3HZF | pdb_00003hzf

3ILZ | pdb_00003ilz

3QNE | pdb_00003qne

3QO5 | pdb_00003qo5

3QO7 | pdb_00003qo7

3QO8 | pdb_00003qo8

6EKN | pdb_00006ekn

6ELA | pdb_00006ela

6ENM | pdb_00006enm

6EOX | pdb_00006eox

6ESM | pdb_00006esm

6MBM | pdb_00006mbm

6VLA | pdb_00006vla

8EB1 | pdb_00008eb1