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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kellner, W.A."

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Search Summary

This query matches 171 Structures.

Refinements

Structure Determination Methodology

experimental (171)

Scientific Name of Source Organism

	Bos taurus (55)
	Homo sapiens (29)
	Synechococcus elongatus PCC 7942 = FACHB-805 (19)
	Escherichia coli (9)
	Mastigocladus laminosus (7)
	Mus musculus (6)
	Muvirus mu (5)
	Pseudomonas aeruginosa PAO1 (5)
	Severe acute respiratory syndrome-related coronavirus (5)
	synthetic construct (4)

More...

Taxonomy

	Eukaryota (102)
	Bacteria (54)
	Duplodnaviria (7)
	Riboviria (6)
	other sequences (4)
	Archaea (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (165)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

	Protein (171)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (60)
	2.0 - 2.5 (36)
	2.5 - 3.0 (35)
	3.0 - 3.5 (24)
	3.5 - 4.0 (11)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (8)
	2005 - 2009 (34)
	2010 - 2014 (35)
	2015 - 2019 (55)
	2020 - 2024 (31)
	2025 - 2029 (3)

Enzyme Classification Name

	Oxidoreductases (58)
	Translocases (64)
	Hydrolases (42)
	Transferases (34)
	Lyases (2)

Membrane Protein Annotation

	PDBTM (89)
	MemProtMD (76)
	mpstruc (55)
	OPM (21)

Symmetry Type

	Asymmetric (77)
	Cyclic (90)
	Dihedral (10)
	Icosahedral (2)

SCOP Classification

	Membrane and cell surface proteins and peptides (65)
	All alpha proteins (54)
	All beta proteins (62)
	Small proteins (49)
	Alpha and beta proteins (a+b) (13)
	Alpha and beta proteins (a/b) (4)
	Artifacts (3)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 171 Structures

Page 1 of 7

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1DDZ \| pdb_00001ddz	Download File View File

X-RAY STRUCTURE OF A BETA-CARBONIC ANHYDRASE FROM THE RED ALGA, PORPHYRIDIUM PURPUREUM R-1

Mitsuhashi, S., Mizushima, T., Yamashita, E., Miyachi, S., Tsukihara, T.

(2000) J Biological Chem 275: 5521-5526

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Porphyridium purpureum
Macromolecule	CARBONIC ANHYDRASE (protein)
Unique Ligands	ZN

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1ERZ \| pdb_00001erz	Download File View File

CRYSTAL STRUCTURE OF N-CARBAMYL-D-AMINO ACID AMIDOHYDROLASE WITH A NOVEL CATALYTIC FRAMEWORK COMMON TO AMIDOHYDROLASES

Nakai, T., Hasegawa, T., Yamashita, E., Yamamoto, M., Kumasaka, T., Ueki, T., Nanba, H., Ikenaka, Y., Takahashi, S., Sato, M., Tsukihara, T.

(2000) Structure 8: 729-737

Released	2001-04-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Agrobacterium sp. KNK712
Macromolecule	N-CARBAMYL-D-AMINO ACID AMIDOHYDROLASE (protein)

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1IOO \| pdb_00001ioo	Download File View File

CRYSTAL STRUCTURE OF NICOTIANA ALATA GEMETOPHYTIC SELF-INCOMPATIBILITY ASSOCIATED SF11-RNASE

Ida, K., Sato, M., Sakiyama, F., Norioka, S., Yamamoto, M., Kumasaka, T., Yamashita, E.

(2001) J Mol Biology 314: 103-112

Released	2002-05-08
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Nicotiana alata
Macromolecule	SF11-RNASE (protein)
Unique branched monosaccharides	BMA, MAN, NAG, XYP

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1IWG \| pdb_00001iwg	Download File View File

Crystal structure of Bacterial Multidrug Efflux transporter AcrB

Murakami, S., Nakashima, R., Yamashita, E., Yamaguchi, A.

(2002) Nature 419: 587-593

Released	2002-10-23
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia coli
Macromolecule	AcrB (protein)

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1O5W \| pdb_00001o5w	Download File View File

The structure basis of specific recognitions for substrates and inhibitors of rat monoamine oxidase A

Ma, J., Yoshimura, M., Yamashita, E., Nakagawa, A., Ito, A., Tsukihara, T.

(2004) J Mol Biology 338: 103-114

Released	2004-04-20
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Rattus norvegicus
Macromolecule	Amine oxidase [flavin-containing] A (protein)
Unique Ligands	FAD, MLG

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1OCC \| pdb_00001occ	Download File View File

STRUCTURE OF BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE

Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., Yoshikawa, S.

(1996) Science 272: 1136-1144

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CU, HEA, MG, ZN

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1OCO \| pdb_00001oco	Download File View File

BOVINE HEART CYTOCHROME C OXIDASE IN CARBON MONOXIDE-BOUND STATE

Tsukihara, T., Yao, M.

(1998) Science 280: 1723-1729

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CMO, CU, HEA, MG, NA, ZN

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1OCR \| pdb_00001ocr	Download File View File

BOVINE HEART CYTOCHROME C OXIDASE IN THE FULLY REDUCED STATE

Tsukihara, T., Yao, M.

(1998) Science 280: 1723-1729

Released	1999-07-29
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CU, HEA, MG, NA, ZN

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1OCZ \| pdb_00001ocz	Download File View File

BOVINE HEART CYTOCHROME C OXIDASE IN AZIDE-BOUND STATE

Tsukihara, T., Yao, M.

(1998) Science 280: 1723-1729

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	AZI, CU, HEA, MG, NA, ZN

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1UKL \| pdb_00001ukl	Download File View File

Crystal structure of Importin-beta and SREBP-2 complex

Lee, S.J., Sekimoto, T., Yamashita, E., Nagoshi, E., Nakagawa, A., Imamoto, N., Yoshimura, M., Sakai, H., Tsukihara, T., Yoneda, Y.

(2003) Science 302: 1571-1575

Released	2003-12-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Importin beta-1 subunit (protein) Sterol regulatory element binding protein-2 (protein)

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1V54 \| pdb_00001v54	Download File View File

Bovine heart cytochrome c oxidase at the fully oxidized state

Tsukihara, T., Shimokata, K., Katayama, Y., Shimada, H., Muramoto, K., Aoyama, H., Mochizuki, M., Shinzawa-Itoh, K., Yamashita, E., Yao, M., Ishimura, Y., Yoshikawa, S.

(2003) Proc Natl Acad Sci U S A 100: 15304-15309

Released	2003-12-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CDL, CHD, CU, CUA, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, UNX, ZN

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1V55 \| pdb_00001v55	Download File View File

Bovine heart cytochrome c oxidase at the fully reduced state

Tsukihara, T., Shimokata, K., Katayama, Y., Shimada, H., Muramoto, K., Aoyama, H., Mochizuki, M., Shinzawa-Itoh, K., Yamashita, E., Yao, M., Ishimura, Y., Yoshikawa, S.

(2003) Proc Natl Acad Sci U S A 100: 15304-15309

Released	2003-12-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CDL, CHD, CU, CUA, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, UNX, ZN

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1WRU \| pdb_00001wru	Download File View File

Structure of central hub elucidated by X-ray analysis of gene product 44; baseplate component of bacteriophage Mu

Kondou, Y., Kitazawa, D., Takeda, S., Yamashita, E., Mizuguchi, M., Kawano, K., Tsukihara, T.

To be published

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Muvirus mu
Macromolecule	43 kDa tail protein (protein)

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1WSR \| pdb_00001wsr	Download File View File

Crystal Structure of Human T-protein of Glycine Cleavage System

Okamura-Ikeda, K., Hosaka, H., Yoshimura, M., Yamashita, E., Toma, S., Nakagawa, A., Fujiwara, K., Motokawa, Y., Taniguchi, H.

(2005) J Mol Biology 351: 1146-1159

Released	2005-08-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Aminomethyltransferase (protein)
Unique Ligands	SO4

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1WSV \| pdb_00001wsv	Download File View File

Crystal Structure of Human T-protein of Glycine Cleavage System

Okamura-Ikeda, K., Hosaka, H., Yoshimura, M., Yamashita, E., Toma, S., Nakagawa, A., Fujiwara, K., Motokawa, Y., Taniguchi, H.

(2005) J Mol Biology 351: 1146-1159

Released	2005-08-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Aminomethyltransferase (protein)
Unique Ligands	SO4, THH

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1X0G \| pdb_00001x0g	Download File View File

Crystal Structure of IscA with the [2Fe-2S] cluster

Morimoto, K., Yamashita, E., Kondou, Y., Lee, S.J., Tsukihara, T., Nakai, M.

(2006) J Mol Biology 360: 117-132

Released	2006-06-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	IscA (protein)
Unique Ligands	FES, NA

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2D1N \| pdb_00002d1n	Download File View File

Collagenase-3 (MMP-13) complexed to a hydroxamic acid inhibitor

Kohno, T., Hochigai, H., Yamashita, E., Tsukihara, T., Kanaoka, M.

(2006) Biochem Biophys Res Commun 344: 315-322

Released	2006-06-27
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Homo sapiens
Macromolecule	Collagenase 3 (protein)
Unique Ligands	CA, FA4, ZN

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2D1O \| pdb_00002d1o	Download File View File

Stromelysin-1 (MMP-3) complexed to a hydroxamic acid inhibitor

Kohno, T., Hochigai, H., Yamashita, E., Tsukihara, T., Kanaoka, M.

(2006) Biochem Biophys Res Commun 344: 315-322

Released	2006-06-27
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	Stromelysin-1 (protein)
Unique Ligands	CA, FA4, ZN

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2DHH \| pdb_00002dhh	Download File View File

Crystal structure of a multidrug transporter reveal a functionally rotating mechanism

Murakami, S., Nakashima, R., Yamashita, E., Matsumoto, T.

(2006) Nature 443: 173-179

Released	2006-08-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	ACRB (protein)

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2DR6 \| pdb_00002dr6	Download File View File

Crystal structure of a multidrug transporter reveal a functionally rotating mechanism

Murakami, S., Nakashima, R., Yamashita, E., Matsumoto, T.

(2006) Nature 443: 173-179

Released	2006-08-22
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli
Macromolecule	ACRB (protein)
Unique Ligands	DM2

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2DRD \| pdb_00002drd	Download File View File

Crystal structure of a multidrug transporter reveal a functionally rotating mechanism

Murakami, S., Nakashima, R., Yamashita, E., Matsumoto, T.

(2006) Nature 443: 173-179

Released	2006-08-22
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli
Macromolecule	ACRB (protein)
Unique Ligands	MIY

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2DYR \| pdb_00002dyr	Download File View File

Bovine heart cytochrome C oxidase at the fully oxidized state

Shinzawa-Itoh, K., Aoyama, H., Muramoto, K., Kurauchi, T., Mizushima, T., Yamashita, E., Tsukihara, T., Yoshikawa, S.

(2007) EMBO J 26: 1713-1725

Released	2007-04-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CDL, CHD, CU, CUA, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, UNX, ZN

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2DYS \| pdb_00002dys	Download File View File

Bovine heart cytochrome C oxidase modified by DCCD

Shinzawa-Itoh, K., Aoyama, H., Muramoto, K., Kurauchi, T., Mizushima, T., Yamashita, E., Tsukihara, T., Yoshikawa, S.

(2007) EMBO J 26: 1713-1725

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CDL, CHD, CU, CUA, DCW, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, UNX, ZN

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2E0Z \| pdb_00002e0z	Download File View File

Crystal structure of virus-like particle from Pyrococcus furiosus

Akita, F., Chong, K.T., Tanaka, H., Yamashita, E., Miyazaki, N., Nakaishi, Y., Namba, K., Ono, Y., Suzuki, M., Tsukihara, T., Nakagawa, A.

(2007) J Mol Biology 368: 1469-1483

Released	2007-04-17
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Pyrococcus furiosus
Macromolecule	Virus-like particle (protein)

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2E74 \| pdb_00002e74	Download File View File

Crystal Structure of the Cytochrome b6f Complex from M.laminosus

Cramer, W.A., Yamashita, E., Zhang, H.

(2007) J Mol Biology 370: 39-52

Released	2007-06-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mastigocladus laminosus
Macromolecule	Unique protein chains: 8
Unique Ligands	BCR, CD, CLA, FES, HEM, OPC, SQD, UMQ

1 to 25 of 171 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DDZ | pdb_00001ddz

1ERZ | pdb_00001erz

1IOO | pdb_00001ioo

1IWG | pdb_00001iwg

1O5W | pdb_00001o5w

1OCC | pdb_00001occ

1OCO | pdb_00001oco

1OCR | pdb_00001ocr

1OCZ | pdb_00001ocz

1UKL | pdb_00001ukl

1V54 | pdb_00001v54

1V55 | pdb_00001v55

1WRU | pdb_00001wru

1WSR | pdb_00001wsr

1WSV | pdb_00001wsv

1X0G | pdb_00001x0g

2D1N | pdb_00002d1n

2D1O | pdb_00002d1o

2DHH | pdb_00002dhh

2DR6 | pdb_00002dr6

2DRD | pdb_00002drd

2DYR | pdb_00002dyr

2DYS | pdb_00002dys

2E0Z | pdb_00002e0z

2E74 | pdb_00002e74